Table 6

EST clusters without KOG assignment predicted to be highly 1N-specific based on statistical comparison of libraries

Cluster ID

Number of 1N ESTs

P-value

Homolog ID

Homolog description

BLAST


GS00667

7

3.9 × 10-3

DYHC_ANTCR

Dynein beta chain, ciliary

2 × 10-52

GS01639

6

7.8 × 10-3

BSN1_BACAM

Extracellular ribonuclease precursor

2 × 10-10

GS02259

7

3.9 × 10-3

GAS8_CHLRE

Growth arrest-specific protein 8 homolog (Protein PF2)

2 × 10-82

GS00095

6

7.8 × 10-3

DYHB_CHLRE

Dynein beta chain, flagellar outer arm

1 × 10-35

GS03902

6

7.8 × 10-3

*Q94EY1_CHLRE

Predicted protein

8 × 10-14

GS00471

6

7.8 × 10-3

*A9BCA5_PROM4

Putative uncharacterized protein

2 × 10-80

GS00126

7

3.9 × 10-3

STCE_ECO57

Metalloprotease stcE precursor

5 × 10-31

GS00242

8

2.0 × 10-3

SPT17_HUMAN

Spermatogenesis-associated protein 17

8 × 10-11

GS00012

9

9.8 × 10-4

DYH6_HUMAN

Axonemal beta dynein heavy chain 6

1 × 10-129

GS00276

11

2.4 × 10-4

PLMN_MACEU

Plasminogen precursor

2 × 10-15

GS00140

10

4.9 × 10-4

Y326_METJA

Uncharacterized protein MJ0326

1 × 10-64

GS01207

8

2.0 × 10-3

CF206_MOUSE

Uncharacterized protein C6orf206 homolog

2 × 10-26

GS01392

9

9.8 × 10-4

DYH3_MOUSE

Axonemal beta dynein heavy chain 3

5 × 10-89

GS02146

9

9.8 × 10-4

CCD37_MOUSE

Coiled-coil domain-containing protein 37

3 × 10-21

GS00154

6

7.8 × 10-3

IQCG_MOUSE

IQ domain-containing protein G

3 × 10-22

GS02689

6

7.8 × 10-3

RNF32_MOUSE

RING finger protein 32

2 × 10-11

GS00461

10

4.9 × 10-4

NAT_MYCSM

Arylamine N-acetyltransferase

2 × 10-21

GS03363

6

7.8E-03

*A1UWW2_BURMS

RemN protein

6 × 10-06

GS00524

8

2.0E-03

*Q0 MYX1_EMIHU

Putative uncharacterized protein

3 × 10-55

GS00907

7

3.9E-03

*Q0 MYV7_EMIHU

Putative uncharacterized protein

7 × 10-07

GS02894

6

7.8E-03

*Q9ZTY0_EMIHU

Putative calcium binding protein

2 × 10-07

GS02739

8

2.0E-03

*Q2 MCN4_HYDAT

HyTSR1 protein

5 × 10-07

GS01630

7

3.9E-03

*A0L4Q4_MAGSM

Cadherin

4 × 10-12

GS02194

8

2.0E-03

*C1 MZQ6_9CHLO

Predicted protein

9 × 10-07

GS00043

7

3.9E-03

*C1NAB5_9CHLO

Predicted protein

6 × 10-14

GS02204

6

7.8E-03

*C1EGP6_9CHLO

Predicted protein

2 × 10-09

GS02009

6

7.8E-03

*A9UNX1_MONBE

Predicted protein

4 × 10-24

GS03800

8

2.0E-03

*Q0JCM6_ORYSJ

Os04 g0461600 protein

3 × 10-09

GS00472

6

7.8E-03

*Q00Y28_OSTTA

Chromosome 12 contig 1, DNA sequence

2 × 10-13

GS00972

6

7.8E-03

*A0DFH5_PARTE

Chromosome undetermined scaffold_49, whole genome shotgun sequence

7 × 10-13

GS00363

8

2.0E-03

*A9RPM7_PHYPA

Predicted protein

2 × 10-07

GS00157

12

1.2E-04

*Q0E9S1_PLEHA

Putative beta-type carbonic anhydrase

9 × 10-70

GS00753

6

7.8E-03

*Q0E9R5_PLEHA

Putative uncharacterized protein

2 × 10-30

GS02990

15

1.5E-05

*Q2NSA6_SODGM

Hypothetical phage protein

5 × 10-06

GS00195

7

3.9E-03

*C4EA11_STRRS

Putative uncharacterized protein

4 × 10-12

GS01216

8

2.0E-03

*B4WU30_9SYNE

Putative uncharacterized protein

1 × 10-06

GS00006

8

2.0E-03

*B8BYB9_THAPS

Predicted protein

4 × 10-12

GS00629

6

7.8E-03

*B8LBM2_THAPS

Predicted protein

1 × 10-32

GS03100

8

2.0E-03

*A5AXV4_VITVI

Putative uncharacterized protein

7 × 10-07

Orphan genes tested

GS01257

25

1.5 × 10-8

GS01805

16

7.7 × 10-6


Only clusters with zero ESTs originating from the 2N library are shown, and only the orphans confirmed by RT-PCR are included in this table. Homolog IDs are marked as in Table 5. Additional data file 4 gives a complete list of all clusters predicted to be 1N-specific by statistical comparison of libraries.

von Dassow et al. Genome Biology 2009 10:R114   doi:10.1186/gb-2009-10-10-r114

Open Data