Table 2

Hybrid selection-enhanced detection of fusion transcripts

5' Gene

5' Chr.

3' Gene

3' Chr.

Before^a

After^a

BCR

22

ABL1

9

13

874

NUP214^b

9

XKR3^{b, c}

22

9

152

SNHG3-RCC1^{b, c}

1

PICALM^b

11

1

39

PRIM1^{c, d}

12

NACA^{b, d}

12

0

22

NCKIPSD ^d

3

CELSR3^{c, d}

3

0

5

SLC29A1^{c, d}

6

HSP90AB1 ^d

6

0

2

^aNumber of sequence reads before and after hybrid selection. ^bFusion transcript reads identified from more than one exon in this gene. ^cNot included in hybrid selection bait genes. ^dNot previously annotated, read-through transcripts between adjacent genes.

Levin et al. Genome Biology 2009 10:R115   doi:10.1186/gb-2009-10-10-r115