Figure 6.

Accuracy of sequence variant calls compared with microarray genotype calls. The detection rate (dashed lines) and concordance (solid lines) of variant calls versus the MAQ quality score [33] are shown for target sequences (a) and on or near (target ± 150 bp) targets (b). A filter requiring five or more reads was first applied, and then the detection and concordance rates at the various MAQ quality score thresholds was determined.