Table 1

Experimental and in silico DNA indexes and parameters of GAP model

Sample ID

DNA index FCM

DNA index GAP

DNA index OverUnder

Tumor content 1-pBAF

Contraction qLRR


BLC_B1_T14

1.14

0.85

0.98

0.85

0.37

BLC_B1_T17

0.84

0.82

0.97

0.77

0.17

BLC_B1_T19

1.6

1.63

2.93

0.4

0.27

BLC_B1_T20

1.41

1.48

3.06

0.4

0.2

BLC_B1_T22a

1.98

0.94

1.02

0.87

0.44

BLC_T07

1.68

1.49

3.12

0.44

0.28

BLC_T09

2.02

1.85

1.89

0.92

0.47

BLC_T10

1.88

1.9

1.07

0.95

0.47

BLC_T12

1.51

1.54

2.56

0.65

0.35

BLC_T15

1.11

0.89

0.99

0.74

0.27

BLC_T23

1.32

1.39

2.72

0.41

0.21

BLC_T31

1.91

1.84

1.48

0.84

0.45

BLC_T34a

1.55

0.99

1.04

0.87

0.42

BLC_T37

1.51

1.53

1.44

0.89

0.44

L_B1_T24B

1.84

1.64

2.61

0.59

0.29

L_B1_T25A

1.00

1.04

3.03

0.39

0.17

L_B1_T30

1.84

1.83

1.53

0.78

0.42

L_B1_T47

1.00

1.03

1.47

0.45

0.17


aTwo samples with clear near-diploid pattern of GAP and discordant experimental DNA indexes.

Popova et al. Genome Biology 2009 10:R128   doi:10.1186/gb-2009-10-11-r128

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