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Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq

Mehdi Motallebipour17*, Adam Ameur28, Madhu Sudhan Reddy Bysani1, Kalicharan Patra19, Ola Wallerman1, Jonathan Mangion3, Melissa A Barker4, Kevin J McKernan5, Jan Komorowski26 and Claes Wadelius1*

Author Affiliations

1 Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE-75185, Sweden

2 Linnaeus Centre for Bioinformatics, Uppsala University, Biomedical Center, Husargatan 3, Uppsala SE-75124, Sweden

3 Applied Biosystems UK, 120 Birchwood Boulevard, Warrington WA3 7QH, Cheshire, UK

4 Life Technologies, 850 Lincoln Centre Drive, Foster City, CA 94404, USA

5 Life Technologies, 500 Cummings Center, Suite 2400, Beverly, MA 01915, USA

6 Interdisciplinary Centre for Mathematical and Computer Modeling, Warsaw University, Krakowskie Przedmieœcie 26/28, Warszawa 00-927, Poland

7 Current address: MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London W12 0NN, UK

8 Current address: Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Dag Hammarskjölds väg 20, Uppsala SE-75185, Sweden

9 Current address: Department of Development and Genetics, EBC, Uppsala University, Norbyvägen 18, Uppsala SE-75236, Sweden

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Genome Biology 2009, 10:R129  doi:10.1186/gb-2009-10-11-r129

Published: 17 November 2009

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Supplementary results, materials and methods, Figures S1 to S8, and Tables S1 to S14.

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