Table 2

Overlap between putative FOXA binding sites and the binding of other factors

Number of regions

HNF4α*

GABP

USF1

USF2


FOXA1

8,175

5,043 (62%)

47 (0.6%)

232 (2.8%)

288 (3.5%)

FOXA2

7,153

3,838 (54%)

158 (2.2%)

257 (3.6%)

274 (3.8%)

FOXA3

4,598

2,536 (55%)

147 (3.2%)

186 (4.0%)

227 (4.9%)

(FOXA1+FOXA2)-FOXA3

121

75 (62%)

0 (0%)

3 (2.5%)

3 (2.5%)

(FOXA2+FOXA3)-FOXA1

96

16 (17%)

22 (22.9%)

4 (4.2%)

4 (4.2%)

(FOXA1+FOXA3)-FOXA2

102

27 (26%)

0 (0%)

2 (2%)

3 (3%)

FOXA1+FOXA2+FOXA3

2,304

1,762 (76%)

31 (1.3%)

99 (4.3%)

140 (6.1%)


*Hepatocyte nuclear factor 4a. GA binding protein. Upstream stimulatory factor.

Motallebipour et al. Genome Biology 2009 10:R129   doi:10.1186/gb-2009-10-11-r129

Open Data