Method
COMIT: identification of noncoding motifs under selection in coding sequences
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* Corresponding author: Jeffrey H Chuang chuangj@bc.edu
Department of Biology, Boston College, 140 Commonwealth Avenue, Chestnut Hill, MA 02467, USA
Genome Biology 2009, 10:R133 doi:10.1186/gb-2009-10-11-r133
Published: 20 November 2009Additional files
Additional data file 1:
Figure S1: improved correlation in z-score and Ks for larger clades. Figure S2: comparison of naïve codon completion and nucleotide-by-nucleotide Ks methods. Figure S3: comparison of mouse-human COMIT scores to scores uncalibrated for amino acids.
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Additional data file 2:
COMIT scores and nucleotide-by-nucleotide Ks values for hexamers. Table S1: COMIT scores for all hexamers in multiple lineage comparisons. Table S2: Ks values. Table S3: motifs with z > 15 in all three mammalian lineages.
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