Table 2 |
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Summary of targets predicted for non-homologous putative polycistronic clustered miRNAs in Arabidopsis, rice and poplar |
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Targets |
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Non-homologous MIRNA clusters |
ESTs overlapping the cluster |
Predicted |
Cleavage validated for at least one target [reference]* |
|
|
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Arabidopsis |
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Ath-MIR397b-857 |
No |
Laccases (3/1) |
|
|
Ath-MIR859-774 |
No |
F-box proteins (35/5) |
|
|
Ath-MIR842-846 |
No |
JR/MBP (1/10) |
Yes [15] |
|
Ath-MIR851-771 |
No |
EIF2 for miR771 (1) no target for miR851 |
No [15] |
|
Ath-MIR850-863 |
EG495879 EG495880 EG514601 DR380439, AV523115† |
No target |
- |
|
Poplar |
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Ptc-MIR482-1448 |
DB893204 DB893031 BP928209 CX175581 |
Disease resistance proteins (12/2) |
Yes [44] |
|
Ptc-MIR1446b-477a |
No |
Gibberellin response modulator-like protein (DELLA) (1) |
|
|
Ptc-MIR1446a-477b |
No |
Gibberellin response modulator-like protein (DELLA) (1) |
|
|
Rice |
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Osa-MIR1876-1862d-1884b |
Os10g0170200‡ |
No target |
- |
|
Osa-MIR1423-1868 |
Os04g32710‡ |
No target |
- |
|
|
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For predicted targets, the number of targets found for each miRNA of the non-homologous cluster is indicated in parentheses. *Validated using 5' RACE (rapid amplification of cDNA ends) PCR. †ESTs cover the region including only miR863. ‡The consecutive miRNAs are predicted in the intron of a protein coding gene (putative ribosomal protein). Ath, A. thaliana; Osa, O. sativa; Ptc, P. trichocarpa. |
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Merchan et al. Genome Biology 2009 10:R136 doi:10.1186/gb-2009-10-12-r136 |
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