Genome Biology

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A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

Desmond S Lun*, Ashley Sherrid, Brian Weiner, David R Sherman and James E Galagan

Genome Biology 2009, 10:R142 doi:10.1186/gb-2009-10-12-r142

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Proceedings   Open Access

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite

Xi Wang, Xuegong Zhang BMC Systems Biology 2011, 5(Suppl 2):S3 (14 December 2011)

Method   Open Access Highly Accessed

ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions

Naim U Rashid, Paul G Giresi, Joseph G Ibrahim, Wei Sun, Jason D Lieb Genome Biology 2011, 12:R67 (25 July 2011)

ZINBA is a method for analyzing peaks in next generation sequencing datasets such as ChIP-seq or DNase-seq