Table 1

Results of CSDeconv on DosR data

Peak ID

Position

Amplitude

Position of motif match

Difference

Absolute difference

Location


1

88,097.4

2.4

88,125.5

28.1

28.1

Upstream of Rv0079

2

434,899.0

2.8

434,926.5

27.5

27.5

In Rv0356c; upstream of Rv0355c

3

665,844.1

7.8

665,861.5

17.4

17.4

In Rv0573c; upstream of Rv0572c

4

668,490.6

2.8

668,497.5

6.9

6.9

Upstream of Rv0574c

5

801,443.4

3.6

801,480.5

37.1

37.1

In Rv0702

6

1,639,602.3

8.5

1,639,627.5

25.2

25.2

In Rv1453

7

1,960,515.3

13.7

1,960,520.5

5.2

5.2

Upstream of Rv1733c

8

1,960,611.5

28.0

1,960,624.5

13

13

Upstream of Rv1733c

9

1,960,697.2

11.0

Upstream of Rv1733c

10

1,965,459.6

10.8

1,965,471.5

11.9

11.9

Upstream of Rv1737c

11

1,965,540.8

15.2

1,965,511.5

-29.3

29.3

Upstream of Rv1737c

12

2,056,358.2

2.7

2,056,375.5

17.3

17.3

Upstream of Rv1813c, Rv1814

13

2,238,941.0

9.5

2,238,938.5

-2.5

2.5

Upstream of Rv1996

14

2,256,459.3

13.0

2,256,496.5

37.2

37.2

Upstream of Rv2007c

15

2,278,994.7

43.5

2,279,005.5

10.8

10.8

Upstream of Rv2031c, Rv2032

16

2,279,049.0

25.8

2,279,062.5

13.5

13.5

Upstream of Rv2031c, Rv2032

17

2,949,475.3

5.7

2,949,472.5

-2.8

2.8

Upstream of Rv2623

18

2,953,044.8

8.3

2,953,074.5

29.7

29.7

Upstream of Rv2626c

19

2,954,750.4

5.1

2,954,792.5

42.1

42.1

Upstream of Rv2627c, Rv2628

20

2,955,065.5

9.9

2,955,031.5

-34

34

Upstream of Rv2627c, Rv2628

21

2,955,479.2

9.5

2,955,476.5

-2.7

2.7

Upstream of Rv2629

22

3,492,069.6

12.0

3,492,092.5

22.9

22.9

In Rv3126c; upstream of Rv3127

23

3,496,438.8

54.7

3,496,451.5

12.7

12.7

Upstream of Rv3130c, Rv3131

24

3,500,822.1

3.6

3,500,853.5

31.4

31.4

Upstream of Rv3134c


CSDeconv identifies a total of 24 binding sites. The position of the sequence matching the motif shown in Figure 3a is given if such a sequence exists within 50 bp of the predicted binding site.

Lun et al. Genome Biology 2009 10:R142   doi:10.1186/gb-2009-10-12-r142

Open Data