Table 2

Results of CSDeconv on GABP data

Peak ID

Position

Amplitude

Position of motif match

Difference

Absolute difference

Location

CpG island


1

60,209,266.5

145.6

60,209,299.5

33

33

Upstream of Hs.631589

No

2

60,209,352.0

242.4

60,209,319.5

-32.5

32.5

Upstream of Hs.631589

No

3

60,209,441.8

32.1

60,209,417.5

-24.3

24.3

In Hs.631589

No

4

60,355,290.1

93.1

60,355,272.5

-17.6

17.6

In TNNI3

No

5

60,355,384.7

109.8

60,355,373.5

-11.2

11.2

In TNNI3

No

6

60,483,301.5

116.7

60,483,320.5

19

19

Upstream of HSPBP1

Yes

7

60,508,823.3

53.5

60,508,860.5

37.2

37.2

In BRSK1

No

8

60,589,079.4

89.0

60,589,061.5

-17.9

17.9

In LOC388564, Upstream of RPL28

Yes

9

60,784,129.0

152.4

60,784,167.5

38.5

38.5

Upstream of ZNF579

Yes

10

60,802,703.2

72.5

60,802,723.5

20.3

20.3

In FIZ1

Yes

11

60,802,828.5

34.2

Upstream of FIZ1

Yes

12

60,808,717.3

19.1

60,808,762.5

45.2

45.2

Downstream of ZNF524

Yes

13

60,838,116.9

163.1

Upstream of ZNF580

Yes

14

60,838,170.7

87.4

60,838,194.5

23.8

23.8

Upstream of ZNF580

Yes

15

60,846,738.1

37.1

Upstream of ZNF581

Yes

16

60,856,978.7

23.4

Upstream of U2AF2

Yes

17

60,878,268.6

125.4

60,878,250.5

-18.1

18.1

Upstream EPN1

Yes

18

60,878,368.7

105.4

60,878,386.5

17.8

17.8

Upstream of EPN1

Yes

19

61,517,917.1

24.8

Upstream of LOC729994

Yes

20

61,518,034.1

98.8

61,518,049.5

15.4

15.4

Upstream of LOC729994

Yes

21

61,518,366.6

26.5

61,518,358.5

-8.1

8.1

Upstream of LOC729994

Yes

22

61,741,681.4

16.8

61,741,681.5

0.1

0.1

In ZFP28

Yes

23

61,741,850.8

25.5

61,741,894.5

43.7

43.7

In ZFP28

Yes


CSDeconv identifies a total of 23 binding sites between position 60,000,000 and 62,000,000 on chromosome 19. The position of the sequence matching the motif shown in Figure 3a is given if such a sequence exists within 50 bp of the predicted binding site.

Lun et al. Genome Biology 2009 10:R142   doi:10.1186/gb-2009-10-12-r142

Open Data