Table 3

Comparison of CSDeconv with "simplified" CSDeconv

DosR data

GABP data



Motif match for CSDeconv

Motif match for simplified CSDeconv

Motif match for CSDeconv

Motif match for simplified CSDeconv



88,125.5

88,124.5

60,209,242

434,926.5

434,925.5

60,209,279

665,861.5

665,860.5

60,209,300

60,209,299

665,882.5

60,209,320

60,209,319

668,497.5

668,498.5

60,209,356

801,480.5

60,209,397

1,639,628

1,639,629

60,209,418

60,209,417

1,960,521

1,960,520

60,355,273

60,355,274

1,960,542

60,355,294

1,960,625

1,960,624

60,355,314

1,965,472

1,965,473

60,355,334

1,965,512

1,965,513

60,355,374

60,355,375

1,965,533

60,355,395

2,056,376

2,056,377

60,355,415

2,056,410

60,355,435

2,238,919

60,483,321

60,483,320

2,238,939

2,238,940

60,508,762

2,256,475

60,508,861

60,508,862

2,256,497

2,256,498

60,589,062

60,589,061

2,279,006

2,279,007

60,589,119

2,279,027

60,589,144

2,279,063

2,279,062

60,589,163

2,949,473

2,949,472

60,784,040

2,949,496

60,784,108

2,953,075

2,953,074

60,784,168

60,784,167

2,953,099

60,784,201

2,954,793

60,802,658

2,955,032

2,955,033

60,802,702

2,955,099

60,802,724

60,802,725

2,955,477

60,802,741

3,492,093

3,492,094

60,802,761

3,496,452

3,496,453

60,802,785

3,500,832

60,802,817

3,500,854

3,500,853

60,808,690


60,808,717

60,808,763

60,808,770

60,808,789

60,808,815

60,838,195

60,838,196

60,846,664

60,846,794

60,857,070

60,878,251

60,878,250

60,878,292

60,878,366

60,878,387

60,878,388

61,517,979

61,518,050

61,518,051

61,518,359

61,741,682

61,741,862

61,741,895

61,741,918


Locations of motif matches for CSDeconv and a simplified CSDeconv that uses motif finding instead of blind deconvolution are listed for both the DosR and GABP datasets. Offsets are observed in the matching sequences for the two methods owing to differing motifs found by the methods.

Lun et al. Genome Biology 2009 10:R142   doi:10.1186/gb-2009-10-12-r142

Open Data