Table 1

Arabidopsis genome and AtTILE1 array annotation data

Annotation

TAIR7*

AtTILE1

CCGs


Protein coding

27,029

25,677

6,269

Pseudogenes or TE

3,889

2,863

81

Noncoding RNAs

1,123

MicroRNA

114

62 (30)

6

Small nucleolar RNA

71

17 (29)

1

Small nuclear RNA

13

0

ND

Pre-transfer RNA

689

2 (129)

0

Ribosomal RNA

4

0

ND

Other

221

121 (29)

15

Total

32,041

6,372


Annotation units receiving consideration had at least two unique corresponding array features. Values in parentheses are the number of transcripts with a single corresponding feature. *The Arabidopsis Information Resource (TAIR) version 7 genome annotation [30]. Circadian clock regulated genes. ND, not determined; TE, transposable element.

Hazen et al. Genome Biology 2009 10:R17   doi:10.1186/gb-2009-10-2-r17

Open Data