![]() ResearchUse of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum1 Department of Cell Biology, ICND 202, The Scripps Research Institute, North Torrey Pines Road, La Jolla, CA 92037, USA 2 Department of Microbiology, Columbia University College of Physicians and Surgeons, West 186th Street, New York, NY 10032, USA 3 The Broad Institute of MIT and Harvard, Cambridge Center, Cambridge, MA 02142, USA 4 Department of Biochemistry, Albert Einstein College of Medicine at Yeshiva University, Morris Park Avenue, Bronx, NY 10461, USA 5 Genomics Institute of the Novartis Research Foundation, John Jay Hopkins Drive, San Diego, CA 92121, USA 6 The Broad Institute of MIT and Harvard, Cambridge Center, Cambridge, MA 02142, USA 7 Department of Immunology and Infectious Diseases, Harvard School of Public Health, Huntington Avenue, Boston, MA 02115, USA 8 School for Health Studies, Simmons College, The Fenway, Boston, MA 02115, USA 9 Department of Medicine, Columbia University College of Physicians and Surgeons, West 186th Street, New York, NY 10032, USA
Genome Biology 2009, 10:R21doi:10.1186/gb-2009-10-2-r21
Subject areas: Drug discovery, Medicine, Microbiology and parasitology Additional filesAdditional data file 1: Presented is a table listing MOID gene present calls and average log2 ratios for Dd2, HB3, 3D7attB and FOS-RDd2-CL1 Format: XLS Size: 1.3MB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 2: Presented is a table listing CNVs predicted by our algorithm in Dd2, HB3, 3D7attB and FOS-RDd2-CL1. Format: XLS Size: 43KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 3: Table S1 contains SNP prediction results for Dd2. Table S2 contains SNP test set filtering information. Figure S1 is the probe behavior based on SNP position. Figure S2 is a genome-wide view of polymorphisms detected by microarray and sequencing in Dd2 relative to 3D7. Figure S3 contains control experiments for fosmidomycin resistance metabolite profiling. Format: DOC Size: 1.7MB Download file This file can be viewed with: Microsoft Word Viewer Additional data file 4: Presented is a table listing polymorphisms predicted by our algorithm in Dd2, HB3, 3D7attB, and FOR-RDd2-Cl1. Format: XLS Size: 11.2MB Download file This file can be viewed with: Microsoft Excel Viewer |


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