Method
Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes
-
* Corresponding author: Gabi Kastenmüller g.kastenmueller@helmholtz-muenchen.de
1 Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München - German Research Center for Environmental Health, Ingolstädter Landstraße, D-85764 Neuherberg, Germany
2 Computer-Chemie-Centrum, Universität Erlangen-Nürnberg, Nägelsbachstraße, D-91052 Erlangen, Germany
3 Molecular Networks GmbH, Henkestraße 91, D-91052 Erlangen, Germany
4 Chair for Genome-oriented Bioinformatics, Technische Universität München, Life and Food Science Center Weihenstephan, Am Forum 1, D-85354 Freising-Weihenstephan, Germany
Genome Biology 2009, 10:R28 doi:10.1186/gb-2009-10-3-r28
Published: 10 March 2009Additional files
Additional data file 1:
Completely sequenced genomes included in our analyses and the genomes' phenotypic traits.
Format: XLS Size: 73KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 2:
Classification quality diagrams for all phenotypes and the resulting relevant pathways.
Format: PDF Size: 689KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 3:
The procedure used for evaluating the automatic metabolic reconstruction part of our method and the evaluation results obtained.
Format: PDF Size: 300KB Download file
This file can be viewed with: Adobe Acrobat Reader