Genome Biology

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TFCat: the curated catalog of mouse and human transcription factors

Debra L Fulton, Saravanan Sundararajan, Gwenael Badis, Timothy R Hughes, Wyeth W Wasserman, Jared C Roach and Rob Sladek*

Genome Biology 2009, 10:R29 doi:10.1186/gb-2009-10-3-r29

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Methodology   Open Access

Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection

Konstantina Dimitrakopoulou, Charalampos Tsimpouris, George Papadopoulos, Claudia Pommerenke, Esther Wilk, Kyriakos N Sgarbas, Klaus Schughart, Anastasios Bezerianos Journal of Clinical Bioinformatics 2011, 1:27 (21 October 2011)

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Systems biology of interstitial lung diseases: integration of mRNA and microRNA expression changes

Ji-Hoon Cho, Richard Gelinas, Kai Wang, Alton Etheridge, Melissa G Piper, Kara Batte, Duaa Dakhlallah, Jennifer Price, Dan Bornman, Shile Zhang, Clay Marsh, David Galas BMC Medical Genomics 2011, 4:8 (17 January 2011)

Integrating mRNA and microRNA profiles of interstitial lung diseases using a systems biology approach highlights the network perturbations and key microRNAs involved in the progression of the diseases.

Research article   Open Access

Mechano-transduction in periodontal ligament cells identifies activated states of MAP-kinases p42/44 and p38-stress kinase as a mechanism for MMP-13 expression

Nelli Ziegler, Angel Alonso, Thorsten Steinberg, Dale Woodnutt, Annette Kohl, Eva Müssig, Simon Schulz, Pascal Tomakidi BMC Cell Biology 2010, 11:10 (28 January 2010)