Table 1

List of genes used in this study

Symbol

Gene name

Ortholog

ToxoDB ID

Promoter length (bp)


Gylcolysis

HK

Hexokinase

+

57.m00001

900

G6PI

Glucose-6-phosphate-isomerase

+

76.m00001

2,000

PFK

Phosphofructokinase

49.m03242

2,000

ALD

Aldolase

+

46.m00002

1,370

TPI

Triose-phosphate-isomerase

+

42.m00050

2,000

GAPDH

Glyceraldehydye-3-phosphate dehydrogenase

+

80.m00003

2,000

PGK

Phosphoglycerate kinase

641.m000193

2,000

PGM

Phosphoglucomutase

113.m00016

1,500

ENO

Enolase*

+

59.m03410

2,000

PyK

Pyruvate kinase

55.m00007

1,500

Nucleotide metabolism

AK

Adenosine kinase

+

50.m00018

2,000

CTPS

Cytidine synthase

+

129.m00261

2,000

DCDA

Deoxycytidine deaminase

+

8.m00191

2,000

DHFR-TS

Dihydrofolate reducatase-thymidine synthase

50.m00016

2,000

GMPS

Guanidine monophosphate synthase

+

44.m00023

2,000

RDPR

Ribonucelotide diphosphate reductase

83.m00003

2,000

UPRT

Uracil phosphoribosyl transferase*

583.m00018

2,000

AT

Adenosine transporter

49.m00004

2,000

Micronemal proteins

MIC1

Microneme 1

+

80.m00012

1,500

MIC2

Microneme 2

+

20.m00002

2,000

MIC3

Microneme 3

641.m00002

2,000

MIC4

Microneme 4

+

25.m00006

2,000

MIC5

Microneme 5

+

65.m00002

2,000

MIC6

Microneme 6

+

38.m00003

2,000

MIC7

Microneme 7

55.m00014

2,000

MIC8

Microneme 8*

50.m00002

2,000

MIC9

Microneme 9

49.m03396

2,000

MIC10

Microneme 10

+

50.m00010

2,000

MIC11

Microneme 11

20.m05914

2,000

M2AP

Microneme-2-associated protein

33.m00006

2,000

Ribosomal proteins

RPS29

Ribosomal protein S29

49.m03285

800

RPS38

Ribosomal protein S38

44.m04616

1,000

RPS3

Ribosomal protein S3

44.m04669

1,000

RPS13

Ribosomal protein S13

59.m03516

1,000

RPL9

Ribosomal protein L9*

76.m00009

1,200

RPS25

Ribosomal protein S25

44.m00003

1,300

RPS10

Ribosomal protein S10

64.m00338

700

RPL25

Ribosomal protein L25

55.m00189

1,000


The list of genes and the lengths of their upstream regions that were used in the studies to identify regulatory motifs. A plus sign in the Ortholog column indicates that a corresponding ortholog in E. tenella was obtained and added to the search. Representative genes used in mutagenesis and expression analyses are denoted by an asterisk.

Mullapudi et al. Genome Biology 2009 10:R34   doi:10.1186/gb-2009-10-4-r34

Open Data