Table 3 |
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|
Gene Ontology categories significantly enriched among motif-containing genes |
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|
Motif |
GO category |
Description |
p-value |
Adjusted p-value |
|
|
||||
|
GLYCB |
GO:0016530 |
Metallochaperone activity |
1.00E-05 |
0.0004 |
|
MICB |
GO:0016530 |
Metallochaperone activity |
1.00E-05 |
0.0004 |
|
NTBA |
GO:0022414 |
Reproductive process |
1.00E-06 |
0.0001 |
|
NTBA |
GO:0016530 |
Metallochaperone activity |
1.00E-05 |
0.0004 |
|
NTBB |
GO:0002376 |
Immune system process |
1.00E-06 |
0.0002 |
|
NTBB |
GO:0009987 |
Cellular process |
0.0005 |
0.0110 |
|
NTBB |
GO:0009055 |
Electron carrier activity |
0.0025 |
0.0371 |
|
NTBB |
GO:0008152 |
Metabolic process |
0.0026 |
0.0367 |
|
NTBB |
GO:0030234 |
Enzyme regulator activity |
0.0030 |
0.0400 |
|
RPA |
GO:0045735 |
Nutrient reservoir activity |
1.00E-06 |
0.0001 |
|
RPA |
GO:0005840 |
Ribosome |
1.45E-06 |
0.0001 |
|
RPA |
GO:0005198 |
Structural molecule activity |
3.65E-06 |
0.0002 |
|
RPA |
GO:0006412 |
Translation |
0.0001 |
0.0039 |
|
RPA |
GO:0009987 |
Cellular process |
0.0004 |
0.0096 |
|
RPA |
GO-0043226 |
Organelle |
0.0005 |
0.0110 |
|
RPA |
GO-0032991 |
Macromolecular complex |
0.0005 |
0.0107 |
|
RPA |
GO:0051234 |
Establishment localization |
0.0008 |
0.0148 |
|
RPA |
GO:0051179 |
Localization |
0.0008 |
0.0156 |
|
RPB |
GO-0044421 |
Extracellular region part |
1.00E-07 |
3.52E-05 |
|
RPB |
GO:0022414 |
Reproductive process |
1.00E-06 |
0.0001 |
|
RPB |
GO:0016530 |
Metallochaperone activity |
1.00E-05 |
0.0003 |
|
RPB |
GO:0006412 |
Translation |
0.0001 |
0.0020 |
|
RPB |
GO:0005840 |
Ribosome |
0.0003 |
0.0074 |
|
RPB |
GO-0043226 |
Organelle |
0.0010 |
0.0172 |
|
RPB |
GO:0009987 |
Cellular process |
0.0018 |
0.0285 |
|
RPB |
GO:0005198 |
Structural molecule activity |
0.0018 |
0.0282 |
|
|
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|
Significantly enriched GO categories (adjusted p-value < 0.05) for motif-containing genes. The results are listed by each motif and ordered based on their Benjamini Hochberg adjusted p-value. A good correlation is observed between the functional pathways associated with the seed genes and the GO category that is over-represented in the corresponding motif-containing genome-wide gene sets in the case of motifs NTBB, RPA and RPB. |
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|
Mullapudi et al. Genome Biology 2009 10:R34 doi:10.1186/gb-2009-10-4-r34 |
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