Additional data file 4.
The EGT enrichment analysis for map groups, KEGG maps, KEGG modules, EC number and co-factors is given. For map groups and the first EC number tier both over- and under-representation are shown and for all other enrichment analysis only over-representation is shown. For all enrichment types the following information is given: the number of EGT enzymes of that type for the given organism; the total number of enzymes of that type from the given organism; a P-value corresponding to the probability of the level of representation; and an enrichment score. The P-values were calculated using the hypergeometric distribution. For KEGG modules the number of additional low confidence EGT predictions is also shown. The low-confidence predictions lack the bootstrap support and manual inspection that the high-confidence predictions have.
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Whitaker et al. Genome Biology 2009 10:R36 doi:10.1186/gb-2009-10-4-r36