FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
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* Corresponding authors: Jessica Severin severin@gsc.riken.jp - Alistair RR Forrest alistair.forrest@gmail.com
- † Equal contributors
Genome Biology 2009, 10:R39 doi:10.1186/gb-2009-10-4-r39
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Review
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul JP Bonnal, José M Fernández, Takatomo Fujisawa, Paul MK Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R Kinjo, Fumikazu Konishi, Yulia Kovarskaya et al. Journal of Biomedical Semantics 2011, 2:4 (2 August 2011) The challenges discussed during the second DBCLS BioHackathon, from data providers, middleware providers, interface designers and end-users perspective.
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Method
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation Hideya Kawaji, Jessica Severin, Marina Lizio, Andrew Waterhouse, Shintaro Katayama, Katharine M Irvine, David A Hume, Alistair RR Forrest, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub Genome Biology 2009, 10:R40 (19 April 2009) This article is part of a collection on FANTOM4 The genome-scale data collected by the FANTOM4 collaborative research project are presented as an integrated web resource. |