Software
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
- † Equal contributors
1 RIKEN Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa, 230-0045 Japan
2 Biozentrum, University of Basel, and Swiss Institute of Bioinformatics, Klingelbergstrasse, CH-4056 Basel, 4056, Switzerland
3 The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Roslin, EH259PS, UK
4 The Eskitis Institute for Cell and Molecular Therapies, Griffith University, Brisbane Innovation Park, Don Young Road, Nathan, QLD 4111, Australia
Genome Biology 2009, 10:R39 doi:10.1186/gb-2009-10-4-r39
Published: 19 April 2009Additional files
Additional File 1:
Summary of the current data stored in EEDB at the time of publication, and the accession numbers for each of the raw data sets (from CIBEX and DDBJ).
Format: DOC Size: 68KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional File 2:
The EGR1 gene as an example in the gene centric view of EEDB.
Format: PDF Size: 171KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 3:
The sub-network view of EEDB.
Format: PDF Size: 174KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 4:
Information available as popups in EEDB (edge types and edge weights used in EEDB, CAGE defined promoters, and an explanation of the subnet view).
Format: DOC Size: 44KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional File 5:
An example of how EEDB can be used with gene-centric and sub-network views for the key monocytic marker CD14.
Format: PDF Size: 1MB Download file
This file can be viewed with: Adobe Acrobat Reader
