Table 1

Contents of the FANTOM4 instance of EdgeExpressDB: features

Features

Source

Genomic co-ordinates


Gene

Entrez [8]

Yes

Transcription start site (L1)

FANTOM4 [1]

Yes

Promoter (L2)

FANTOM4 [1]

Yes

Promoter (L3)

FANTOM4 [1]

Yes

miRNA (pre-)

Mirbase 10.0 [9]

Yes

miRNA (mature)

Mirbase 10.0 [9]

No

Illumina probe

FANTOM4 [1]

Yes/no

Agilent miRNA probe

FANTOM4 [1]

No

TFBS matrix

FANTOM4 [1]

No


Severin et al. Genome Biology 2009 10:R39   doi:10.1186/gb-2009-10-4-r39

Open Data