Table 2

Contents of the FANTOM4 instance of EdgeExpressDB: edges

Edges

Source

Relationship


TF-promoter (L2)

Predictions (FANTOM4 [1])

Belongs to

Promoter (L2)-promoter region (L3)

FANTOM4 [1]

Belongs to

Promoter region (L3)-gene

FANTOM4 [1]

Belongs to

Promoter region (L3)-pre-miRNA

FANTOM4 [1]

Belongs to

Pre-miRNA-mature miRNA

FANTOM4 [1]

Belongs to

miRNA-target

ElMMo (SIB) [10]

Interaction

Protein-protein

Published

Interaction

TF-gene

Published

Interaction

TF-gene

ChIP-chip

Interaction

TF-gene (perturbation edge)

siRNA knockdown

Interaction

miRNA-target (perturbation edge)

miRNA overexpression

Interaction


TF, transcription factor.

Severin et al. Genome Biology 2009 10:R39   doi:10.1186/gb-2009-10-4-r39

Open Data