Table 2 |
||
|
Contents of the FANTOM4 instance of EdgeExpressDB: edges |
||
|
Edges |
Source |
Relationship |
|
|
||
|
TF-promoter (L2) |
Predictions (FANTOM4 [1]) |
Belongs to |
|
Promoter (L2)-promoter region (L3) |
FANTOM4 [1] |
Belongs to |
|
Promoter region (L3)-gene |
FANTOM4 [1] |
Belongs to |
|
Promoter region (L3)-pre-miRNA |
FANTOM4 [1] |
Belongs to |
|
Pre-miRNA-mature miRNA |
FANTOM4 [1] |
Belongs to |
|
miRNA-target |
ElMMo (SIB) [10] |
Interaction |
|
Protein-protein |
Published |
Interaction |
|
TF-gene |
Published |
Interaction |
|
TF-gene |
ChIP-chip |
Interaction |
|
TF-gene (perturbation edge) |
siRNA knockdown |
Interaction |
|
miRNA-target (perturbation edge) |
miRNA overexpression |
Interaction |
|
|
||
|
TF, transcription factor. |
||
|
Severin et al. Genome Biology 2009 10:R39 doi:10.1186/gb-2009-10-4-r39 |
||
