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The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation

Hideya Kawaji1*, Jessica Severin1, Marina Lizio1, Andrew Waterhouse1, Shintaro Katayama1, Katharine M Irvine2, David A Hume3, Alistair RR Forrest14, Harukazu Suzuki1, Piero Carninci1, Yoshihide Hayashizaki1 and Carsten O Daub1

Author Affiliations

1 RIKEN Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa, 230-0045 Japan

2 Institute for Molecular Bioscience, University of Queensland, Brisbane, St Lucia QLD 4072, Australia

3 The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Roslin, EH259PS, UK

4 The Eskitis Institute for Cell and Molecular Therapies, Griffith University, QLD 4111, Australia

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Genome Biology 2009, 10:R40  doi:10.1186/gb-2009-10-4-r40

Published: 19 April 2009

Additional files

Additional data file 1:

An investigation design graph of RNA preparation showing the cell batches are prepared from the same original cells, treated with several conditions, and RNA is extracted. These steps are described in the MAGE/ISA-tab file as meta-data, which include all of our experimental details, and the content is visualized as an investigation design graph by SDRF2GRAPH [20].

Format: PNG Size: 9.3MB Download file

Open Data

Additional data file 2:

An extended version of Table 1, which includes DAS sources and GFF files for the data shown in the genome browser.

Format: XLS Size: 66KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data