Table 1

Data content of the FANTOM web resource

Cell conditions and biological replicates

Type of experiments

Track names in the genome browser


THP-1 differentiation time course × 3

CAGE

TSS positions

Promoters

Promoter regions

THP-1 differentiation time course × 3

Illumina microarray

Illumina biological replicates

THP-1 systematic perturbation (52 transcription factors knocked down with siRNA) × 3

Illumina microarray

Illumina knock-down siRNA series

THP-1 before and after differentiation × 2

H3K9Ac ChIP-chip with whole genome tiling array

H3K9 by whole tiling array

THP-1 before and after differentiation × 1

RNA polymerase II ChIP-chip with whole genome tiling array

RNA polymerase II H3K9 by whole tiling array

THP-1 before and after differentiation × 2

PU.1 ChIP-chip with promoter tiling array

PU.1 promoter array

THP-1 before and after differentiation × 2

SP1 ChIP-chip with promoter tiling array

SP1 promoter array

THP-1 differentiation time course × 1

Small RNA sequencing

ShortRNA cluster, shortRNA sequence

THP-1 differentiation time course × 2

qRT-PCR for transcription factors

Transcription factor qRT-PCR

Human 127 RNA samples (including the differentiation time courses)

CAGE

Tag cluster

Mouse 206 RNA samples (including the differentiation time courses)

CAGE

Tag cluster


Kawaji et al. Genome Biology 2009 10:R40   doi:10.1186/gb-2009-10-4-r40

Open Data