Table 2

Highly conserved milk proteins

Protein name

GLEAN ID*

Gene symbol

Average PID


Rab 11A

GLEAN_20537

RAB11A

100

GTP binding protein G I G S G T beta subunit 1

GLEAN_21827

GBB1

100

GTP binding regulatory protein beta 2 chain

GLEAN_22534

GNB2

100

Rho C

GLEAN_13128

RHOC

99.8

Rab 11B

GLEAN_03051

RAB11B

99.6

Rap 1b

GLEAN_10112

RAP1B

99.6

GTP binding protein Sara

GLEAN_16602

SAR1A

99.5

Rab 3A

GLEAN_02763

RAB3A

99.5

Histone 2, H2ab

GLEAN_23583

HIST2H2AB

99.2

SAR1B protein

GLEAN_08536

SAR1B

98.9

14-3-3 protein beta alpha

GLEAN_04527

YWHAB

98.9

Leucine-rich repeat containing protein 8

GLEAN_26477

LRC8A

98.8

Rab 18

GLEAN_21462

RAB18

98.6

Rho GDP-dissociation

GLEAN_11194

ARHGDIA

98.5

Rab 5C

GLEAN_17381

RAB5C

98.5

AD158

GLEAN_08550

LRC8C

98.1

Rab 3C

GLEAN_20950_P10949

RAB3C

98.0

Eukaryotic translation initiation factor 4, gamma 2

GLEAN_19671

EIF4G2

97.9

ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit

GLEAN_03119

ATP5A1

97.7

ARP3 (actin-related protein 3, yeast) homolog

GLEAN_25161

ACTR3

97.5

Vimentin

GLEAN_20783

VIM

97.3

GTP binding protein alpha 14

GLEAN_08781

GNA14

97.2

Endoplasmin precursor (GRP94/GP96)

GLEAN_20794

HSP90B1

97.1

Lymphocyte cytosolic protein 1 (65 K macrophage protein/L-plastin)

GLEAN_05236

LCP1

97.0

Retinal short-chain dehydrogenase/reductase

GLEAN_03662

SDR1

96.9


*Manually curated full length sequences are indicated by the following accession format: GLEAN_ID_ACCESSION where ACCESSION is the UniProt accession for the replacement amino acid sequence and GLEAN_ID is the bovine consensus gene identifier for the original sequence.

Lemay et al. Genome Biology 2009 10:R43   doi:10.1186/gb-2009-10-4-r43

Open Data