Table 3 |
||||||
|
Type 1 error of different pathway enrichment methods |
||||||
|
Pattern number |
A |
SEPEA_NT1 |
GSEA |
Maxmean |
SEPEA_NT2 |
SEPEA_NT3 |
|
|
||||||
|
1 |
0.01 |
8 |
5 |
85 |
13 |
135 |
|
0.05 |
36 |
51 |
187 |
44 |
266 |
|
|
5 |
0.01 |
7 |
12 |
12 |
7 |
15 |
|
0.05 |
51 |
45 |
48 |
52 |
53 |
|
|
|
||||||
|
Type 1 errors (in terms of the number of experiments out of 1,000 that gave P-values for the randomization tests below α = 0.01 and 0.05 levels) for each of the five methods and for correlation patterns 1 and 5. |
||||||
|
Thomas et al. Genome Biology 2009 10:R44 doi:10.1186/gb-2009-10-4-r44 |
||||||
