Research
Co-evolutionary networks of genes and cellular processes across fungal species
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* Corresponding authors: Tamir Tuller tamirtul@post.tau.ac.il - Martin Kupiec martin@post.tau.ac.il
1 School of Computer Sciences, Tel Aviv University, Ramat Aviv 69978, Israel
2 Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Ramat Aviv 69978, Israel
3 School of Medicine, Tel Aviv University, Ramat Aviv 69978, Israel
Genome Biology 2009, 10:R48 doi:10.1186/gb-2009-10-5-r48
Published: 5 May 2009Additional files
Additional file 1:
Orthologous sets that exhibit positive evolution for each of the tree branches.
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Additional file 2:
Supplementary notes 1 to 6.
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Additional file 3:
GO processes with less than 20 genes (biological process ontology) sorted by their mean rERP and variance of rERP.
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Additional file 4:
Mean correlation between the evolutionary patterns of pairs of GO groups (y-axis) as a function of their distance (the shortest connecting pathway) in the GO network (x-axis) when using the ontology of S. pombe.
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Additional file 5:
Pairs of GO groups exhibiting a significant correlation between their rERPs.
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Additional file 6:
GO enrichments (biological process) for the conserved and non-conserved genes.
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Additional file 7:
Distribution of the number of annotations per gene for the conserved and non-conserved genes.
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Additional file 8:
ER values computed in our study versus the ER values computed in Wall et al. [8].
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