Table 3 |
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|
Characteristics of the intergenic repeat elements present in P. fluorescens SBW25, Pf0-1, and Pf-5 |
||||||
|
Repeat family |
Size (bp) |
G+C% |
SBW25 |
Pf0-1 |
Pf-5 |
Structure |
|
|
||||||
|
R0 |
89 |
59.81 |
612 |
36 |
- |
IRs: 24 bp |
|
R1 |
80 |
68.31 |
- |
9 |
621 |
IRs: 30 bp |
|
R2 |
110 |
66.52 |
516 |
- |
4 |
IRs: 43 bp |
|
R5 |
50 |
65.07 |
2 |
52 |
- |
|
|
R6 |
177 |
59.09 |
- |
50 |
- |
IRs: 34 bp |
|
R6-partial |
120 |
59.61 |
- |
9 |
- |
- |
|
R26 |
352 |
60.76 |
- |
20 |
- |
- |
|
R30 |
120 |
58.47 |
4 |
15 |
- |
- |
|
R69 |
62 |
64.67 |
- |
12 |
- |
- |
|
R87 |
58 |
68.94 |
- |
- |
106 |
- |
|
R178 |
101 |
61.86 |
18 |
28 |
9 |
IRs: 11 bp (internal) |
|
R200 |
320 |
60.25 |
47 |
- |
8 |
- |
|
Total elements |
- |
- |
1,199 |
231 |
748 |
- |
|
Inverted repeats* |
||||||
|
IR1_g |
23-28 |
66.52 |
125 |
- |
||
|
IR1_g |
21-28 |
64.7 |
922 |
- |
||
|
IR1_g |
23-27 |
65.2 |
36 |
- |
||
|
|
||||||
|
* IRg_1 elements vary slightly in size, but all match closely with the consensus sequence and structure. |
||||||
|
Silby et al. Genome Biology 2009 10:R51 doi:10.1186/gb-2009-10-5-r51 |
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