Table 3

Characteristics of the intergenic repeat elements present in P. fluorescens SBW25, Pf0-1, and Pf-5

Repeat family

Size (bp)

G+C%

SBW25

Pf0-1

Pf-5

Structure


R0

89

59.81

612

36

-

IRs: 24 bp

R1

80

68.31

-

9

621

IRs: 30 bp

R2

110

66.52

516

-

4

IRs: 43 bp

R5

50

65.07

2

52

-

R6

177

59.09

-

50

-

IRs: 34 bp

R6-partial

120

59.61

-

9

-

-

R26

352

60.76

-

20

-

-

R30

120

58.47

4

15

-

-

R69

62

64.67

-

12

-

-

R87

58

68.94

-

-

106

-

R178

101

61.86

18

28

9

IRs: 11 bp (internal)

R200

320

60.25

47

-

8

-

Total elements

-

-

1,199

231

748

-

Inverted repeats*

IR1_g

23-28

66.52

125

-

IR1_g

21-28

64.7

922

-

IR1_g

23-27

65.2

36

-


* IRg_1 elements vary slightly in size, but all match closely with the consensus sequence and structure.

Silby et al. Genome Biology 2009 10:R51   doi:10.1186/gb-2009-10-5-r51

Open Data