Table 3

Genes with more than two novel SNPs in the coding region of TgCkUg2

Gene ID (v4.3)*

Novel SNPs in TgCkUg2

SNPs between the three lineages^†

Number

Synonymous

Non-synonymous

Synonymous

Non-synonymous

Protein description

641.m01562

IV

1

1

12

86

SRS16B

641.m02553

IV

1

1

6

1

WD-40 repeat protein, putative

49.m03276

VI

1

1

0

4

ROP29

49.m03279

VI

2

8

1

13

Hypothetical

49.m03372

VI

1

1

13

3

Long chain fatty acid CoA ligase

55.m04829

VIIb

1

3

1

2

SRS26A

44.m02583

VIII

0

2

9

11

Hypothetical

44.m05903

VIII

0

2

7

8

Hypothetical

57.m01765

IX

0

2

143

231

Protein kinase domain containing

2.m00067

IX

3

7

0

0

Hypothetical

57.m01732

IX

0

2

7

8

Hypothetical

80.m02252

IX

1

1

4

2

Phosphoenolpyruvate carboxykinase, putative

42.m07434

X

0

2

0

0

Hypothetical

551.m00238

XII

3

6

8

44

ROP5

65.m00001

XII

4

0

9

6

NTPase I

*Since the comparison was made against the annotation of Me49 in v4.3 of ToxoDB, these gene IDs are used throughout. These remain searchable in the current annotation (v 5.0). ^†Data from ToxoDB showing the total number of SNPs between GT1, Me49 and VEG, in order to put the number of novel SNPs into context.

Bontell et al. Genome Biology 2009 10:R53   doi:10.1186/gb-2009-10-5-r53