Table 4

Genes under selection identified by dN/dS analysis in TgCkUg2

Chromosome (type*)

Comparator

Gene ID (v4.3)

Protein description

dN/dS ratio

P-value


Ia (III)

Me49 (II)

83.m02145

Rhoptry kinase ROP4/ROP7

Infinity

0.025 <P < 0.050

IV (II)

VEG (III)

641.m01516

Hypothetical

Infinity

0.005 <P < 0.010

V (III)

Me49 (II)

39.m00623

Proline-rich protein

Infinity

0.010 <P < 0.025

V (III)

Me49 (II)

31.m01816

Iron-sulfur cluster assembly accessory protein, putative

Infinity

0.010 <P < 0.025

V (III)

Me49 (II)

76.m01544

Hypothetical

Infinity

0.010 <P < 0.025

VI (II)

VEG (III)

49.m03376

Hypothetical

Infinity

0.025 <P < 0.050

VI (II)

VEG (III)

49.m03382

Hypothetical

Infinity

0.010 <P < 0.025

VI (II)

VEG (III)

49.m03431

Hypothetical

Infinity

0.010 <P < 0.025

VIII (III)

Me49 (II)

59.m07776

Hypothetical

Infinity

0.025 <P < 0.050

VIII (III)

Me49 (II)

59.m03361

Transporter, major facilitator family domain containing

4.325

0.010 <P < 0.025

X (II)

Me49 (II)

42.m07434

Hypothetical

Infinity

0.010 <P < 0.025

X (II)

VEG (III)

42.m03570

LytB domain-containing protein

Infinity

0.025 <P < 0.050

X (II)

VEG (III)

42.m00013

GRA3

Infinity

0.010 <P < 0.025

X (II)

VEG (III)

46.m02909

Hypothetical

Infinity

0.025 <P < 0.050

XII (III)

Me49 (II)

551.m00237

Hypothetical

Infinity

0.025 <P < 0.050

XII (III)

Me49 (II)

145.m00337

Hypothetical

6.527

0.010 <P < 0.025


*The chromosomal background genotype. The number of non-synonymous SNPs divided by the number of synonymous SNPs. In most cases, no synonymous SNPs were found, and this rate approaches infinity.

Bontell et al. Genome Biology 2009 10:R53   doi:10.1186/gb-2009-10-5-r53

Open Data