Table 3

Integrated ontology figures

Ontology


Entity

At

Hs

Sc

Sp

Total


Proteins

14,892

54,109

18,007

3,635

90,643

Genes

4,595

10,005

4,695

1,744

21,039

Orthology types

-

-

-

-

5,772


Figures are shown for the composite ontology (CCO): union of the four organism-specific ontologies (A. thaliana (At), H. sapiens (Hs), S. cerevisiae (Sc) and S. pombe (Sp)) plus their orthology relationships. The OrthoMCL execution adds 5,772 clusters containing at least one core cell cycle protein (see 'Data integration' in Materials and methods for the definition of the term 'core cell cycle protein') together with their proteins to CCO; the total number of proteins in CCO is 90,643. Numbers are given for some of the main entities (for example, cell cycle proteins) in the composite ontology (CCO).

Antezana et al. Genome Biology 2009 10:R58   doi:10.1186/gb-2009-10-5-r58

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