Table 1 |
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|
Aggregated amino acid substitution analysis results |
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|
Gene 1 |
Gene 2 |
Outgroup |
Alignment length |
Alignment length without gaps |
Average identity |
Overall substitution number in gene 1 |
Overall substitution number in gene 2 |
P-value |
|
|
||||||||
|
PEPC |
||||||||
|
Sb10g021330 |
Os02g0244700 |
Os01g0758300 |
972 |
958 |
0.76 |
110 |
26 |
5.89E-13 |
|
Zm_NM_00111968 |
Os02g0244700 |
Os01g0758300 |
971 |
968 |
0.78 |
92 |
33 |
1.31E-07 |
|
Sb10g021330 |
Os02g0244700 |
Sb03g035090 |
972 |
958 |
0.76 |
117 |
28 |
1.46E-13 |
|
Zm_NM_00111968 |
Os02g0244700 |
Sb03g035090 |
971 |
968 |
0.77 |
104 |
34 |
2.54E-09 |
|
PPCK |
||||||||
|
Sb04g036570 |
Os02g0807000 |
Sb06g022690 |
309 |
284 |
0.65 |
15 |
14 |
8.53E-01 |
|
Zm_NM_001112338 |
Os02g0807000 |
Sb06g022690 |
309 |
281 |
0.63 |
18 |
11 |
1.94E-01 |
|
CA |
||||||||
|
U08403_FU3 |
Os01g0639900 |
Sb03g029190.1 |
272 |
201 |
0.75 |
19 |
18 |
8.69E-01 |
|
U08403_FU2 |
Os01g0639900 |
Sb03g029190.1 |
273 |
200 |
0.73 |
20 |
18 |
7.46E-01 |
|
U08403_FU1 |
Os01g0639900 |
Sb03g029190.1 |
273 |
202 |
0.79 |
13 |
18 |
3.69E-01 |
|
U08401_FU2 |
Os01g0639900 |
Sb03g029190.1 |
272 |
201 |
0.75 |
18 |
18 |
1.00E+00 |
|
U08401_FU1 |
Os01g0639900 |
Sb03g029190.1 |
273 |
202 |
0.78 |
14 |
18 |
4.80E-01 |
|
Sb03g029170_FU2 |
Os01g0639900 |
Sb03g029190.1 |
272 |
201 |
0.78 |
14 |
16 |
7.15E-01 |
|
Sb03g029170_FU1 |
Os01g0639900 |
Sb03g029190.1 |
273 |
201 |
0.80 |
11 |
20 |
1.06E-01 |
|
Sb03g029180 |
Os01g0639900 |
Sb03g029190.1 |
274 |
202 |
0.80 |
11 |
19 |
1.44E-01 |
|
U08403_FU3 |
Os01g0639900 |
At_NM_111016 |
293 |
201 |
0.50 |
14 |
13 |
8.47E-01 |
|
U08403_FU2 |
Os01g0639900 |
At_NM_111016 |
293 |
200 |
0.49 |
16 |
14 |
7.15E-01 |
|
U08403_FU1 |
Os01g0639900 |
At_NM_111016 |
293 |
202 |
0.50 |
10 |
15 |
3.17E-01 |
|
U08401_FU2 |
Os01g0639900 |
At_NM_111016 |
293 |
201 |
0.50 |
12 |
13 |
8.41E-01 |
|
U08401_FU1 |
Os01g0639900 |
At_NM_111016 |
293 |
202 |
0.50 |
11 |
15 |
4.33E-01 |
|
Sb03g029170_FU2 |
Os01g0639900 |
At_NM_111016 |
293 |
201 |
0.50 |
10 |
10 |
1.00E+00 |
|
Sb03g029170_FU1 |
Os01g0639900 |
At_NM_111016 |
293 |
201 |
0.50 |
9 |
14 |
2.97E-01 |
|
Sb03g029180 |
Os01g0639900 |
At_NM_111016 |
293 |
202 |
0.50 |
8 |
11 |
4.91E-01 |
|
PPDK |
||||||||
|
Sb09g019930 |
Os05g0405000 |
Os03g0432100 |
949 |
946 |
0.83 |
42 |
28 |
9.43E-02 |
|
Zm_NM_001112268 |
Os05g0405000 |
Os03g0432100 |
950 |
944 |
0.83 |
44 |
28 |
5.93E-02 |
|
Sb09g019930 |
Os05g0405000 |
Sb01g031660 |
958 |
946 |
0.76 |
37 |
15 |
2.28E-03 |
|
Zm_NM_001112268 |
Os05g0405000 |
Sb01g031660 |
961 |
942 |
0.78 |
32 |
18 |
4.77E-02 |
|
NADP-MDH |
||||||||
|
Sb07g023920 |
Os08g0562100 |
At_NM_180883 |
443 |
427 |
0.77 |
22 |
19 |
6.39E-01 |
|
Sb07g023910 |
Os08g0562100 |
At_NM_180883 |
443 |
432 |
0.75 |
25 |
16 |
1.60E-01 |
|
ZM_X16084 |
Os08g0562100 |
At_NM_180883 |
443 |
430 |
0.75 |
25 |
13 |
5.16E-02 |
|
NADP-ME |
||||||||
|
Sb03g003230 |
Os01g0188400 |
Os05g0186300 |
642 |
633 |
0.80 |
46 |
16 |
1.39E-04 |
|
Sb03g003230 |
Os01g0188400 |
Sb09g005810 |
642 |
633 |
0.80 |
41 |
20 |
7.17E-03 |
|
Sb03g003220 |
Os01g0188400 |
Os05g0186300 |
650 |
635 |
0.84 |
23 |
15 |
1.94E-01 |
|
ZM_NM_001111843 |
Os01g0188400 |
Os05g0186300 |
641 |
634 |
0.80 |
47 |
16 |
9.40E-05 |
|
ZM_NM_001111913 |
Os01g0188400 |
Os05g0186300 |
668 |
633 |
0.84 |
26 |
15 |
8.58E-02 |
|
PPDK-RP |
||||||||
|
Sb02g035190 |
Os07g0530600 |
At4g21210 |
474 |
426 |
0.58 |
37 |
17 |
6.00E-03 |
|
Zm_NM_001112403 |
Os07g0530600 |
At4g21210 |
474 |
423 |
0.57 |
33 |
23 |
1.80E-01 |
|
Sb02g035190 |
Sb02g035200 |
Os07g0530600 |
476 |
408 |
0.69 |
19 |
22 |
6.40E-01 |
|
Sb02g035190 |
Sb02g035210 |
Os07g0530600 |
483 |
384 |
0.69 |
21 |
22 |
8.70E-01 |
|
Zm_NM_001112403 |
Sb02g035200 |
Os07g0530600 |
472 |
416 |
0.67 |
25 |
22 |
6.60E-01 |
|
Zm_NM_001112403 |
Sb02g035210 |
Os07g0530600 |
482 |
389 |
0.68 |
25 |
25 |
1.00E+00 |
|
|
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|
Wang et al. Genome Biology 2009 10:R68 doi:10.1186/gb-2009-10-6-r68 |
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