Table 1 |
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|
List of 56 gene duplications in S. cerevisiae with KS < 0.35 that appear to span a single locus only |
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|
Duplicate pair |
KS |
Structural category |
Chromosomal location |
Duplication span (bp) |
5' homology (bp) |
3' homology (bp) |
|
|
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|
*YPL220W/YGL135W |
0.0000 |
Complete |
XVI/VII |
657 |
3 |
0 |
|
*YBR031W/YDR012W |
0.0038 |
Complete |
II/IV |
1,102 |
1 |
12 |
|
*YDR342C/YDR343C |
0.0052 |
Complete |
IV/IV |
1,896 |
97 |
86 |
|
*YPR080W/YBR118W |
0.0066 |
Complete |
XVI/II |
1,381 |
0 |
4 |
|
*YOR133W/YDR385W |
0.0072 |
Complete |
XV/IV |
2,533 |
0 |
3 |
|
YMR321C/YPL273W |
0.0155 |
Chimeric |
XIII/XVI |
510 |
0 |
197 |
|
*YDL182W/YDL131W |
0.0222 |
Chimeric |
IV/IV |
1,220 |
0 |
0 |
|
*YJL138C/YKR059W/ |
0.0237 |
Complete |
X/XI |
1,192 |
4 |
0 |
|
YIL177C/YLR462W_464W_466W† |
0.0238 |
Complete |
IX/XII |
6,907 |
816 |
423 |
|
*YBR181C/YPL090C |
0.0388 |
Complete |
II/XVI |
1,107 |
4 |
0 |
|
*YDL136W/YDL191W |
0.0395 |
Complete |
IV/IV |
858 |
2 |
2 |
|
YBL107W-A/YER138W-A |
0.0435 |
Complete |
II/V |
310 |
153 |
52 |
|
*YNL209W/YDL229W |
0.0612 |
Complete |
XIV/IV |
1,883 |
6 |
35 |
|
*YDL184C/YDL133C-A/ |
0.0612 |
Complete |
IV/IV |
113 |
19 |
17 |
|
*YBL072C/YER102W |
0.0817 |
Complete |
II/V |
607 |
3 |
1 |
|
*YJR145C/YHR203C |
0.0854 |
Complete |
X/VIII |
1,060 |
6 |
1 |
|
*YHR141C/YNL162W |
0.0918 |
Complete |
VIII/XIV |
843 |
10 |
0 |
|
*YPR156C/YGR138C |
0.0985 |
Chimeric |
XVI/VII |
1,419 |
0 |
0 |
|
YNL030W/YBR0009C |
0.1062 |
Complete |
XIV/II |
353 |
41 |
0 |
|
*YJR009C/YGR192C |
0.1123 |
Complete |
X/VII |
1,055 |
56 |
0 |
|
YAL005C/YLL024C |
0.1147 |
Complete |
I/XII |
1,931 |
0 |
2 |
|
*YGL076C/YPL198W |
0.1196 |
Complete |
VII/XV1 |
1,658 |
5 |
0 |
|
*YPR102C/YGR085C |
0.1237 |
Complete |
XVI/VII |
534 |
6 |
3 |
|
*YER074W/YIL069C |
0.1333 |
Complete |
V/IX |
876 |
2 |
1 |
|
*YHL001W/YKL006W |
0.1429 |
Complete |
VIII/XI |
819 |
1 |
2 |
|
*YIL018W/YFR031C-A |
0.1523 |
Complete |
IX/VI |
1,167 |
2 |
0 |
|
*YGR118W/YPR132W |
0.1546 |
Complete |
VII/XVI |
810 |
4 |
3 |
|
*YDL131W/YDL182W |
0.1768 |
Chimeric |
IV/IV |
1,232 |
0 |
0 |
|
*YLL045C/YHL033C |
0.1809 |
Complete |
XII/VIII |
774 |
0 |
3 |
|
*YDR447C/YML024W |
0.1896 |
Complete |
IV/XIII |
812 |
3 |
0 |
|
YGL258W/YOR387C |
0.1939 |
Complete |
VII/XV |
1,424 |
796 |
7 |
|
*YNL301C/YOL120C |
0.1955 |
Complete |
XIV/XV |
1,009 |
1 |
0 |
|
*YBR048W/YDR025W |
0.1987 |
Complete |
II/IV |
985 |
3 |
0 |
|
*YLR287C-A/YOR182C |
0.2022 |
Complete |
XII/XV |
628 |
5 |
0 |
|
*YNL302C/YOL121C |
0.2076 |
Complete |
XIV/XV |
991 |
5 |
0 |
|
YIL029C/YPR071W |
0.2154 |
Chimeric |
IX/XVI |
659 |
149 |
0 |
|
YGL147C/YNL067W |
0.2490 |
Complete |
VII/XIV |
576 |
0 |
0 |
|
*YDR450W/YML026C |
0.2491 |
Complete |
IV/XIII |
881 |
4 |
1 |
|
*YMR242C/YOR312C |
0.2504 |
Complete |
XIII/XV |
1,001 |
5 |
0 |
|
*YBR191W/YPL079W |
0.2508 |
Complete |
II/XVI |
910 |
5 |
1 |
|
*YBL027W/YBR084-C |
0.2698 |
Complete |
II/II |
1,079 |
3 |
0 |
|
*YDR312W/YHR066W |
0.2703 |
Complete |
IV/VIII |
1,362 |
0 |
0 |
|
*YDL083C/YMR143W |
0.2838 |
Complete |
IV/XIII |
984 |
4 |
4 |
|
*YEL034W/YJR047C |
0.2838 |
Complete |
V/X |
475 |
0 |
1 |
|
*YGR034W/YLR344W |
0.2841 |
Complete |
VII/XII |
862 |
0 |
1 |
|
*YGL031C/YGR148C |
0.2862 |
Complete |
VII/VII |
471 |
0 |
3 |
|
*YDL082W/YMR142C |
0.2970 |
Complete |
IV/XIII |
1,007 |
3 |
2 |
|
*YLR448W/YML073C |
0.2992 |
Complete |
XII/XIII |
958 |
10 |
2 |
|
*YLR029C/YMR121C |
0.3061 |
Complete |
XII/XIII |
619 |
4 |
0 |
|
*YMR230W/YOR293W |
0.3132 |
Complete |
XIII/XV |
771 |
15 |
1 |
|
*YLR441C/YML063W |
0.3170 |
Complete |
XII/XIII |
774 |
5 |
1 |
|
*YCR024C-A/YEL017C-A |
0.3176 |
Complete |
III/V |
137 |
5 |
0 |
|
*YGR027C/YLR333C |
0.3187 |
Complete |
VII/XII |
345 |
17 |
1 |
|
YHR043C/YHR044C |
0.3245 |
Complete |
VIII/VIII |
776 |
1 |
34 |
|
*YMR186W/YPL240C |
0.3319 |
Complete |
XIII/XVI |
2,132 |
2 |
0 |
|
YDL075W/YLR406C |
0.3363 |
Complete |
IV/XII |
768 |
3 |
2 |
|
|
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|
Columns 1 and 2 list the systematic names of the two paralogs in question as per the Saccharomyces Genome Database. *A gene duplicate pair that has been classified as an ohnolog resulting from a WGD event. †An ancestrally single locus that currently exists as three adjacent genes due to frame-shift mutations. Column 3 lists the synonymous-site divergence (KS) between the two paralogs as computed by the Nei and Gojobori method with a correction for multiple hits. Column 4 lists the particular category of structural resemblance (complete, partial or chimeric). Column 5 lists the chromosomal location of paralogs 1 and 2, respectively. Column 6 provides a minimal estimate of the length of the duplicated region, based on current visual inspection of the extent of sequence homology across the paralogs' coding and flanking regions. Columns 7 and 8 list the extent of discernible sequence homology between the paralogs in their 5' and 3' flanking regions, respectively. |
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|
Katju et al. Genome Biology 2009 10:R75 doi:10.1186/gb-2009-10-7-r75 |
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