Table 3 |
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|
Summary of 24 S. cerevisiae ribosomal protein paralogs with largely nonhomologous intronic sequences despite relatively low levels of synonymous divergence |
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|
I1 (bp) |
I2 (bp) |
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|
|
|
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|
Duplicate pair |
KS |
5' homology (bp) |
3' homology (bp) |
E1 (bp) |
5' H |
NH |
3' H |
E2 (bp) |
5' H |
NH |
3' H |
E3 (bp) |
|
|
||||||||||||
|
YDL075W/YLR406C |
0.3363 |
3 |
2 |
57 |
6 |
415/343 |
0 |
285 |
- |
- |
||
|
YMR230W/YOR293W |
0.3132 |
15 |
1 |
52 |
8 |
400/427 |
2 |
266 |
- |
- |
||
|
YLR448W/YML073C |
0.2992 |
10 |
2 |
15 |
6 |
375/406 |
3 |
516 |
- |
- |
||
|
YDL082W/YMR142C |
0.2970 |
3 |
2 |
8 |
2 |
358/395 |
5 |
592 |
- |
- |
||
|
YGR034W/YLR344W |
0.2841 |
0 |
1 |
19 |
6 |
68/438 |
3 |
365 |
- |
- |
||
|
YDL083C/YMR143W |
0.2838 |
4 |
4 |
24 |
7 |
423/535 |
2 |
408 |
- |
- |
||
|
YBL027W/YBR084C |
0.2698 |
3 |
0 |
2 |
6 |
370/492 |
8 |
568 |
- |
- |
||
|
YBR191W/YPL079W |
0.2508 |
5 |
1 |
11 |
7 |
377/410 |
4 |
472 |
- |
- |
||
|
YMR242C/YOR312C |
0.2504 |
5 |
0 |
1 |
2 |
467/416 |
8 |
518 |
- |
- |
||
|
YDR450W/YML026C |
0.2491 |
4 |
1 |
47 |
8 |
424/390 |
3 |
394 |
- |
- |
||
|
YNL302C/YOL121C |
0.2076 |
5 |
0 |
20 |
10 |
539/378 |
2 |
415 |
- |
- |
||
|
YLR287C-A/YOR182C |
0.2022 |
5 |
0 |
3 |
6 |
420/401 |
4 |
189 |
- |
- |
||
|
YBR048W/YDR025W |
0.1987 |
3 |
0 |
45 |
7 |
502/330 |
2 |
426 |
- |
- |
||
|
YNL301C/YOL120C |
0.1955 |
1 |
0 |
112 |
6 |
424/439 |
2 |
449 |
- |
- |
||
|
YDR447C/YML024W |
0.1896 |
3 |
0 |
3 |
6 |
298/382 |
10 |
408 |
- |
- |
||
|
YGR118W/YPR132W |
0.1546 |
4 |
3 |
65 |
6 |
312/357 |
2 |
373 |
- |
- |
||
|
YIL018W/YFR031C-A |
0.1523 |
2 |
0 |
4 |
6 |
391/138 |
3 |
761 |
- |
- |
||
|
YIL001W/YKL006W |
0.1429 |
1 |
2 |
129 |
7 |
318/318 |
74 |
288 |
- |
- |
||
|
YER074W/YIL069C |
0.1333 |
2 |
1 |
3 |
6 |
458/401 |
2 |
405 |
- |
- |
||
|
YGL076C/YPL198W |
0.1196 |
5 |
0 |
11 |
6 |
451/400 |
12 |
94 |
7 |
456/395 |
5 |
630 |
|
YHR141C/YNL162W |
0.0918 |
10 |
0 |
4 |
5 |
433/504 |
2 |
317 |
- |
- |
||
|
YJR145C/YHR203C |
0.0854 |
6 |
1 |
14 |
7 |
247/260 |
2 |
772 |
- |
- |
||
|
YDL136W/YDL191W |
0.0395 |
2 |
2 |
3 |
4 |
387/473 |
12 |
360 |
- |
- |
||
|
YBR181C/YPL090C |
0.0388 |
4 |
0 |
6 |
4 |
336/378 |
10 |
705 |
- |
- |
||
|
|
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|
Column 3 and 4 list the length of the extent of discernible homology between the two paralogs upstream of the initiation codon and downstream of the termination codon, respectively. Columns 5, 9 and 13 (E1, E2 and E3) list the length of exons 1, 2 and 3 (where applicable), respectively. Columns 6 to 8 provide details about the extent of homology between the two paralogs across intron 1. Columns 6 and 8 list the length of the short tracts of homology in the 5' and 3' ends of intron 1 near the splice junctions. Column 7 lists the length of the nonhomologous tracts of intron 1 for both paralogs. Columns 10 to 12 list similar details for intron 2, where present. |
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|
Katju et al. Genome Biology 2009 10:R75 doi:10.1186/gb-2009-10-7-r75 |
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