Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
- Equal contributors
1 Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Hankou Road, Nanjing, Jiangsu 210093, PR China
2 Beijing Institute of Genomics, Chinese Academy of Sciences, Beitucheng West Road, Chaoyang District, Beijing 100029, PR China
3 Beijing Genomics Institute, Beishan Road, Yantian District, Shenzhen 518083, PR China
4 Graduate University of Chinese Academy of Sciences, Yuquan Road, Shijingshan District, Beijing 100049, PR China
5 Nanjing Institute of Palaeontology and Geology, East Beijing Road, Nanjing, Jiangsu 210008, PR China
Genome Biology 2009, 10:R78 doi:10.1186/gb-2009-10-7-r78Published: 17 July 2009
Additional data file 1:
Table S1: categories of amphioxus small RNAs. Table S2: MIREAP output. Table S3: MIREAP summary, miRAlign output and MiPred output. Table S4: mature sequences of amphioxus miRNAs and their cloning frequencies. Table S5: detailed precursor sequences and exact genome locations of all amphioxus miRNAs. Table S6: plausible amphioxus miRNAs. Table S7: comparison of miRNA expression levels in amphioxus determined by Solexa sequencing and microarray analysis. Table S8: raw data of miRNA microarray. Table S9: evolution history of amphioxus miRNAs. Table S10: comparison of miRNA identified from B. belcheri (Gray), B. floridae, and B. japonicum.
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Additional data file 2:
Predicted stem-loop structures of conserved amphioxus miRNAs.
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Additional data file 3:
Predicted stem-loop structures of amphioxus-specific miRNAs.
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