Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
1 Biozentrum, University of Basel, and Swiss Institute of Bioinformatics, Klingelbergstrasse 50/70, 4056-CH, Basel, Switzerland
2 RIKEN Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho Tsurumi-ku Yokohama, Kanagawa, 230-0045 Japan
3 Laboratory of Quantitative Genomics, Department of Biosystems Science and Engineering, Eidgenössische Technische Hochschule Zurich, Mattenstrasse 26, 4058 Basel, Switzerland
Genome Biology 2009, 10:R79 doi:10.1186/gb-2009-10-7-r79Published: 22 July 2009
Additional data file 1:
Additional results include the Drosophila RNA-seq data, CAGE replicate data, comparison with FANTOM3 clustering, and statistics on the mouse promoterome.
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Additional data file 2:
Data for the 56 human CAGE samples, with tissue/cell line name, treatment and accession numbers.
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