Table 2

Concordant calls

BovineSNP50

MAQ calls

Concordant calls

Homozygote reference

22,999

Homozygote variant

12,043

8,974 (74.51%)

8,949 (99.72%)

Heterozygote

13,683

5,882 (42.98%)

4,157 (70.67%)

Comparison of the SNP calls made from genotype data and the sequence: concordant calls. Genotype data were generated using the Infinium BovineSNP50 BeadChip. Homozygote reference denotes an array-based genotype that is homozygous for the reference allele. Homozygote variant denotes an array-based genotype that is homozygous for a non-reference allele. Heterozygote denotes a heterozygous array-based genotype containing one reference allele and a variant allele.

Eck et al. Genome Biology 2009 10:R82   doi:10.1186/gb-2009-10-8-r82