Table 1

Deeply sampled composite genomes from Iron Mountain community genomic datasets used in binning analysis

Composite genome

Sample(s)

Sequence (Mb)

Coverage*

G+C content

Reference


I-plasma

UBA, UBA BS

1.69

20×

44

This study

E-plasma

UBA, UBA BS

1.58

38

This study

A-plasma

UBA, UBA BS, UBA filtrate

1.94

46

This study

G-plasma

5-way, UBA

1.78

38

This study

Leptospirillum group II

UBA

2.64

25×

55

[55]

Leptospirillum group II

5-way

2.72

20×

55

[9]

Leptospirillum group III

UBA

2.82

10×

58

[56]

Ferroplasma acidarmanus fer1

5-way

1.94

NA

37

[8]

Ferroplasma fer1(env)

5-way

1.46

4.5×

36

[8]

Ferroplasma fer2(env)

5-way

1.82

10×

37

[10]

ARMAN-2

UBA, UBA BS

1.0

15×

47

Baker et al., submitted

ARMAN-4

UBA filtrate

0.81

35

Baker et al., submitted

ARMAN-5

UBA filtrate

0.90

35

Baker et al., submitted

Viral genomes

UBA, UBA BS

Variable

Variable

Variable

[12]


*Estimated sequence coverage (read depth). Genomes used for evaluation of binning performance on variable length fragments. The Leptospirillum group II 5-way genome was included in some ESOM binning and was indistinguishable from the Leptospirillum group II UBA genome, but is not shown in Figure 2. NA, not applicable.

Dick et al. Genome Biology 2009 10:R85   doi:10.1186/gb-2009-10-8-r85

Open Data