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Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes

Xianjun Dong12, David Fredman13 and Boris Lenhard12*

Author Affiliations

1 Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thormøhlensgate 55, N-5008 Bergen, Norway

2 Sars Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgate 55, N-5008 Bergen, Norway

3 Current address: Department for Molecular Evolution and Development, Centre for Organismal Systems Biology, Faculty of Life Sciences, University of Vienna, Althanstrasse, 1090 Wien, Austria

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Genome Biology 2009, 10:R86  doi:10.1186/gb-2009-10-8-r86

Published: 21 August 2009

Additional files

Additional data file 1:

Supplementary methods.

Format: DOC Size: 76KB Download file

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Open Data

Additional data file 2:

Users can set personal search preferences, including which species are used, the ortholog dataset, the appearance of the browser images (image width, connection lines, gene names, and so on), and set criteria that decide which tracks are shown by default based on track content ('smart' view mode).

Format: EPS Size: 1.6MB Download file

Open Data

Additional data file 3:

Using Synorth to detect genome assembly errors.

Format: EPS Size: 2.9MB Download file

Open Data