Table 5

Statistics of the alignments of reads onto the reference genomes

Assisted on

Reads aligning target uniquely

Valid pairs aligning target uniquely


Plasmodium falciparum HB3

Plasmodium falciparum 3D7

79.1%

74.3%

Canis familiaris - 2× assembly

Homo sapiens

64.1%

35.1%

Loxodonta africana

Homo sapiens

51.1%

22.7%

Oryctolagus cuniculus

Homo sapiens

55.3%

25.2%

Otolemur garnetti

Homo sapiens

68.8%

38.0%

Cavia porcellus

Homo sapiens

47.8%

18.5%

Loxodonta africana

Canis familiaris

49.3%

28.8%

Oryctolagus cuniculus

Canis familiaris

48.8%

29.8%

Otolemur garnetti

Canis familiaris

59.6%

43.9%

Cavia porcellus

Canis familiaris

41.6%

22.4%


The projects from the Mammal24 set were assisted against both human and canine references.

Gnerre et al. Genome Biology 2009 10:R88   doi:10.1186/gb-2009-10-8-r88

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