Research
Many LINE1 elements contribute to the transcriptome of human somatic cells
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* Corresponding author: Haig H Kazazian kazazian@mail.med.upenn.edu
Department of Genetics, University of Pennsylvania School of Medicine, Hamilton Walk, Philadelphia, Pennsylvania 19104, USA
Genome Biology 2009, 10:R100 doi:10.1186/gb-2009-10-9-r100
Published: 22 September 2009Additional files
Additional data file 1:
The spreadsheet includes cDNA sequence, L1 assignments, tag counts and related information as indicated in the header.
Format: XLS Size: 66KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 2:
The spreadsheet includes cDNA sequence, L1 assignments, tag counts and related information as indicated in the header.
Format: XLS Size: 50KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 3:
The spreadsheet includes sequences, L1 assignments, counts, and related information.
Format: XLS Size: 116KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 4:
The spreadsheet includes locations, counts, L1 assignments, and other related information. A second worksheet presents this information for tags corresponding to full-length elements only. Grey font indicates 3' truncated elements, green font indicates splicing from greater than 15 kb upstream, while blue font indicates putative non-reference L1s.
Format: XLS Size: 163KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 5:
Oligonucleotides used in this study, as well as sequence corresponding to L1 breakpoint region of a 5' RACE expression tagged site to a non-reference L1.
Format: XLS Size: 28KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 6:
454 5' expression tag pyrosequencing sequence reads and their putative genomic matches.
Format: CSV Size: 2.7MB Download file