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Open Access Highly Accessed Research

Many LINE1 elements contribute to the transcriptome of human somatic cells

Sanjida H Rangwala, Lili Zhang and Haig H Kazazian*

Author Affiliations

Department of Genetics, University of Pennsylvania School of Medicine, Hamilton Walk, Philadelphia, Pennsylvania 19104, USA

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Genome Biology 2009, 10:R100  doi:10.1186/gb-2009-10-9-r100

Published: 22 September 2009

Additional files

Additional data file 1:

The spreadsheet includes cDNA sequence, L1 assignments, tag counts and related information as indicated in the header.

Format: XLS Size: 66KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional data file 2:

The spreadsheet includes cDNA sequence, L1 assignments, tag counts and related information as indicated in the header.

Format: XLS Size: 50KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 3:

The spreadsheet includes sequences, L1 assignments, counts, and related information.

Format: XLS Size: 116KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 4:

The spreadsheet includes locations, counts, L1 assignments, and other related information. A second worksheet presents this information for tags corresponding to full-length elements only. Grey font indicates 3' truncated elements, green font indicates splicing from greater than 15 kb upstream, while blue font indicates putative non-reference L1s.

Format: XLS Size: 163KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 5:

Oligonucleotides used in this study, as well as sequence corresponding to L1 breakpoint region of a 5' RACE expression tagged site to a non-reference L1.

Format: XLS Size: 28KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 6:

454 5' expression tag pyrosequencing sequence reads and their putative genomic matches.

Format: CSV Size: 2.7MB Download file

Open Data