Table 2 |
|||||||
|
Full-length L1 elements identified by 3' expression tag analysis |
|||||||
|
Chromosome band |
Sub-family |
Genome coordinates (hg18) |
ORF1, ORF2 |
Tag count |
In intron of gene, +/- |
dbRIP ID [16] |
Identified by 5' expression tag, count |
|
|
|||||||
|
1p21.1 |
L1HS |
chr1:105187979-105194009 |
-, - |
1 |
No |
||
|
1q25.2 |
L1PA2 |
chr1:177073306-177079473 |
-, - |
3 |
No |
||
|
1q44 |
L1PA3 |
chr1:246757382-246763965 |
-, - |
2 |
No |
Yes, 3 |
|
|
1p31.1 |
L1PA2 |
chr1:83588685-83594736 |
-, - |
1 |
No |
||
|
1p22.3 |
L1HS |
chr1:86917352-86923382 |
Yes, Yes |
1 |
No |
||
|
2q23.1 |
L1HS |
chr2:148662785-148668812 |
Yes, - |
1 |
Yes, + |
||
|
2p24.3 |
L1HS |
chr2:16638475-16644507 |
Yes, Yes |
1 |
Yes, + |
||
|
2q31.1 |
L1HS |
chr2:169813380-169819412 |
Yes, - |
4 |
Yes, - |
||
|
2q31.3 |
L1HS |
chr2:181406634-181412661 |
-, Yes |
3 |
No |
||
|
2q34 |
L1HS |
chr2:214140201-214146231 |
Yes, - |
5 |
Yes, - |
||
|
2q37.1 |
L1HS |
chr2:232722151-232728183 |
-, - |
1 |
Yes, - |
Yes, 1 |
|
|
2p16.2 |
L1PA3 |
chr2:53667675-53673685 |
Yes, - |
1 |
No* |
||
|
2p13.3 |
L1HS |
chr2:71492113-71498139 |
Yes, - |
2 |
Yes, - |
||
|
3q12.2 |
L1PA3 |
chr3:101711142-101717175 |
-, - |
1 |
Yes, + |
||
|
3q13.32 |
L1PA2 |
chr3:120115781-120121808 |
-, - |
1 |
Yes, - |
||
|
3q13.33 |
L1PA2 |
chr3:123243449-123249475 |
Yes, - |
4 |
No |
||
|
3p24.3 |
L1PA3 |
chr3:18992446-18998582 |
-, - |
1 |
No* |
||
|
3p24.3 |
L1PA3 |
chr3:23365739-23371880 |
Yes, - |
1 |
Yes, + |
Yes, 71 |
|
|
4q27 |
L1HS |
chr4:121089330-121095361 |
Yes, - |
2 |
No* |
||
|
4q31.22 |
L1HS |
chr4:145977329-145983590 |
-, - |
1 |
No |
||
|
4p15.32 |
L1HS |
chr4:15452268-15458293 |
Yes, Yes† |
349 |
Yes, + |
||
|
4q13.1 |
L1PA2 |
chr4:64080835-64086866 |
-, - |
6 |
No |
Yes, 30 |
|
|
4q23 |
L1HS |
chr4:99732610-99738637 |
Yes, - |
1 |
Yes, + |
||
|
5q23.2 |
L1PA3 |
chr5:126253878-126259924 |
Yes, - |
4 |
Yes, + |
||
|
5q34 |
L1PA6 |
chr5:162571721-162577711 |
-, - |
3 |
No* |
||
|
5q35.3 |
L1PA2 |
chr5:180262128-180268143 |
Yes, - |
2 |
Yes, - |
||
|
5p13.3 |
L1HS |
chr5:34183708-34189893 |
Yes, - |
1 |
No |
Druze54 |
|
|
5q14.1 |
L1PA3 |
chr5:77910921-77916574 |
-, - |
1 |
Yes, + |
||
|
6q22.31 |
L1PA5 |
chr6:125758770-125765089 |
-, - |
1 |
No |
||
|
6p22.2 |
L1HS |
chr6:24919886-24925913 |
Yes, Yes |
1 |
Yes, + |
AL512428| Database 29‡ |
|
|
6q13 |
L1HS |
chr6:70776961-70783165 |
Yes, - |
17 |
Yes, + |
L1HS169 |
|
|
6q14.3 |
L1HS |
chr6:86765484-86771510 |
Yes, - |
2 |
No |
chr6-8676 |
|
|
6q15 |
L1PA3 |
chr6:88089716-88095715 |
-, - |
1 |
Yes, -+ |
||
|
7q31.1 |
L1HS |
chr7:110670808-110676838 |
Yes, Yes |
5 |
Yes, + |
‡ |
|
|
7q31.1 |
L1HS |
chr7:113203414-113209443 |
Yes, Yes |
13 |
No |
‡ |
|
|
7q36.1 |
L1PA5 |
chr7:149925116-149930649 |
-, - |
17 |
No |
||
|
7p14.3 |
L1PA2 |
chr7:32703791-32709682 |
-, - |
2 |
No* |
||
|
7p12.1 |
L1PA2 |
chr7:50934034-50940065 |
Yes, - |
1 |
No* |
||
|
8p21.2 |
L1PA2 |
chr8:26309046-26315012 |
Yes, - |
12 |
Yes, + |
||
|
8q21.13 |
L1PA2 |
chr8:84521933-84527959 |
Yes, - |
4 |
No |
||
|
8q22.1 |
L1PA2 |
chr8:96633637-96639669 |
Yes, - |
2 |
No* |
||
|
9q31.3 |
L1HS |
chr9:112593199-112599230 |
Yes, - |
2 |
Yes, + |
||
|
9q21.11 |
L1PA2 |
chr9:71281844-71287865 |
-, - |
1 |
Yes, - |
||
|
9q22.32 |
L1HS |
chr9:95915639-95921668 |
Yes, - |
2 |
No |
||
|
10q26.12 |
L1PA3 |
chr10:122660462-122666485 |
-, - |
2 |
No |
Yes, 10 |
|
|
10p15.1 |
L1HS |
chr10:6451604-6457635 |
-, Yes |
2 |
No |
L1HS171| Database 45 |
|
|
11q22.3 |
L1HS |
chr11:108553432-108559463 |
Yes, Yes |
1 |
No |
Yes, 1 |
|
|
11p15.4 |
L1PA2 |
chr11:7635956-7641978 |
-, - |
19 |
No |
||
|
12q23.3 |
L1PA2 |
chr12:105389774-105395799 |
Yes†, - |
1 |
Yes, - |
||
|
12q24.32 |
L1PA3 |
chr12:126916354-126922380 |
-, - |
3 |
No |
||
|
12q13.13 |
L1HS |
chr12:50242683-50248708 |
Yes, - |
2 |
No |
||
|
12q21.1 |
L1PA2 |
chr12:72074857-72080877 |
-, - |
2 |
No |
||
|
12q23.1 |
L1PA2 |
chr12:95233852-95239880 |
-, - |
5 |
Yes, - |
||
|
13q12.3 |
L1HS |
chr13:30774452-30780482 |
Yes, - |
1 |
Yes, + |
||
|
13q13.3 |
L1PA3 |
chr13:36722478-36728518 |
-, - |
2 |
No |
||
|
13q14.2 |
L1HS |
chr13:47937693-47943703 |
-, - |
6 |
Yes, + |
||
|
13q21.32 |
L1PA2 |
chr13:67152381-67158421 |
-, - |
4 |
No |
||
|
14q23.1 |
L1PA2 |
chr14:59482976-59488994 |
-, - |
1 |
Yes, - |
||
|
14q31.1 |
L1PA3 |
chr14:79303855-79309939 |
-, - |
1 |
Yes, + |
||
|
16q22.1 |
L1HS |
chr16:67174881-67180909 |
Yes, - |
1 |
No |
||
|
20p11.21 |
L1HS |
chr20:23354746-23360777 |
Yes, - |
2 |
No* |
||
|
20q13.2 |
L1PA2 |
chr20:51553798-51559820 |
-, - |
1 |
No* |
||
|
22q11.22 |
L1PA3 |
chr22:20,961,183-20,967,196 |
-, - |
1 |
Yes, - |
||
|
22q12.1 |
L1HS |
chr22:27389272-27395303 |
Yes, Yes |
2 |
No* |
L1HS86| AL121825‡ |
|
|
Xq26.1 |
L1PA2 |
chrX:129920587-129926612 |
Yes, - |
2 |
No |
||
|
Xq27.2 |
L1HS |
chrX:141393302-141399320 |
Yes, Yes |
2 |
No |
AL031586 |
|
|
Xp21.3 |
L1PA2 |
chrX:28134830-28140827 |
-, Yes |
1 |
No |
||
|
Xp11.22 |
L1PA2 |
chrX:49711541-49717572 |
Yes, - |
1 |
Yes, + |
||
|
Xq13.2 |
L1PA4 |
chrX:73611039-73617191 |
-, - |
1 |
Yes, - |
||
|
|
|||||||
|
*Spliced ESTs span L1. †Truncated 96 amino acids from carboxyl terminus. ‡Active (>1% L1RP) in cell culture assay [19]. |
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|
Rangwala et al. Genome Biology 2009 10:R100 doi:10.1186/gb-2009-10-9-r100 |
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