Table 2

Full-length L1 elements identified by 3' expression tag analysis

Chromosome band

Sub-family

Genome coordinates (hg18)

ORF1, ORF2

Tag count

In intron of gene, +/-

dbRIP ID [16]

Identified by 5' expression tag, count


1p21.1

L1HS

chr1:105187979-105194009

-, -

1

No

1q25.2

L1PA2

chr1:177073306-177079473

-, -

3

No

1q44

L1PA3

chr1:246757382-246763965

-, -

2

No

Yes, 3

1p31.1

L1PA2

chr1:83588685-83594736

-, -

1

No

1p22.3

L1HS

chr1:86917352-86923382

Yes, Yes

1

No

2q23.1

L1HS

chr2:148662785-148668812

Yes, -

1

Yes, +

2p24.3

L1HS

chr2:16638475-16644507

Yes, Yes

1

Yes, +

2q31.1

L1HS

chr2:169813380-169819412

Yes, -

4

Yes, -

2q31.3

L1HS

chr2:181406634-181412661

-, Yes

3

No

2q34

L1HS

chr2:214140201-214146231

Yes, -

5

Yes, -

2q37.1

L1HS

chr2:232722151-232728183

-, -

1

Yes, -

Yes, 1

2p16.2

L1PA3

chr2:53667675-53673685

Yes, -

1

No*

2p13.3

L1HS

chr2:71492113-71498139

Yes, -

2

Yes, -

3q12.2

L1PA3

chr3:101711142-101717175

-, -

1

Yes, +

3q13.32

L1PA2

chr3:120115781-120121808

-, -

1

Yes, -

3q13.33

L1PA2

chr3:123243449-123249475

Yes, -

4

No

3p24.3

L1PA3

chr3:18992446-18998582

-, -

1

No*

3p24.3

L1PA3

chr3:23365739-23371880

Yes, -

1

Yes, +

Yes, 71

4q27

L1HS

chr4:121089330-121095361

Yes, -

2

No*

4q31.22

L1HS

chr4:145977329-145983590

-, -

1

No

4p15.32

L1HS

chr4:15452268-15458293

Yes, Yes

349

Yes, +

4q13.1

L1PA2

chr4:64080835-64086866

-, -

6

No

Yes, 30

4q23

L1HS

chr4:99732610-99738637

Yes, -

1

Yes, +

5q23.2

L1PA3

chr5:126253878-126259924

Yes, -

4

Yes, +

5q34

L1PA6

chr5:162571721-162577711

-, -

3

No*

5q35.3

L1PA2

chr5:180262128-180268143

Yes, -

2

Yes, -

5p13.3

L1HS

chr5:34183708-34189893

Yes, -

1

No

Druze54

5q14.1

L1PA3

chr5:77910921-77916574

-, -

1

Yes, +

6q22.31

L1PA5

chr6:125758770-125765089

-, -

1

No

6p22.2

L1HS

chr6:24919886-24925913

Yes, Yes

1

Yes, +

AL512428| Database 29

6q13

L1HS

chr6:70776961-70783165

Yes, -

17

Yes, +

L1HS169

6q14.3

L1HS

chr6:86765484-86771510

Yes, -

2

No

chr6-8676

6q15

L1PA3

chr6:88089716-88095715

-, -

1

Yes, -+

7q31.1

L1HS

chr7:110670808-110676838

Yes, Yes

5

Yes, +

7q31.1

L1HS

chr7:113203414-113209443

Yes, Yes

13

No

7q36.1

L1PA5

chr7:149925116-149930649

-, -

17

No

7p14.3

L1PA2

chr7:32703791-32709682

-, -

2

No*

7p12.1

L1PA2

chr7:50934034-50940065

Yes, -

1

No*

8p21.2

L1PA2

chr8:26309046-26315012

Yes, -

12

Yes, +

8q21.13

L1PA2

chr8:84521933-84527959

Yes, -

4

No

8q22.1

L1PA2

chr8:96633637-96639669

Yes, -

2

No*

9q31.3

L1HS

chr9:112593199-112599230

Yes, -

2

Yes, +

9q21.11

L1PA2

chr9:71281844-71287865

-, -

1

Yes, -

9q22.32

L1HS

chr9:95915639-95921668

Yes, -

2

No

10q26.12

L1PA3

chr10:122660462-122666485

-, -

2

No

Yes, 10

10p15.1

L1HS

chr10:6451604-6457635

-, Yes

2

No

L1HS171| Database 45

11q22.3

L1HS

chr11:108553432-108559463

Yes, Yes

1

No

Yes, 1

11p15.4

L1PA2

chr11:7635956-7641978

-, -

19

No

12q23.3

L1PA2

chr12:105389774-105395799

Yes, -

1

Yes, -

12q24.32

L1PA3

chr12:126916354-126922380

-, -

3

No

12q13.13

L1HS

chr12:50242683-50248708

Yes, -

2

No

12q21.1

L1PA2

chr12:72074857-72080877

-, -

2

No

12q23.1

L1PA2

chr12:95233852-95239880

-, -

5

Yes, -

13q12.3

L1HS

chr13:30774452-30780482

Yes, -

1

Yes, +

13q13.3

L1PA3

chr13:36722478-36728518

-, -

2

No

13q14.2

L1HS

chr13:47937693-47943703

-, -

6

Yes, +

13q21.32

L1PA2

chr13:67152381-67158421

-, -

4

No

14q23.1

L1PA2

chr14:59482976-59488994

-, -

1

Yes, -

14q31.1

L1PA3

chr14:79303855-79309939

-, -

1

Yes, +

16q22.1

L1HS

chr16:67174881-67180909

Yes, -

1

No

20p11.21

L1HS

chr20:23354746-23360777

Yes, -

2

No*

20q13.2

L1PA2

chr20:51553798-51559820

-, -

1

No*

22q11.22

L1PA3

chr22:20,961,183-20,967,196

-, -

1

Yes, -

22q12.1

L1HS

chr22:27389272-27395303

Yes, Yes

2

No*

L1HS86| AL121825

Xq26.1

L1PA2

chrX:129920587-129926612

Yes, -

2

No

Xq27.2

L1HS

chrX:141393302-141399320

Yes, Yes

2

No

AL031586

Xp21.3

L1PA2

chrX:28134830-28140827

-, Yes

1

No

Xp11.22

L1PA2

chrX:49711541-49717572

Yes, -

1

Yes, +

Xq13.2

L1PA4

chrX:73611039-73617191

-, -

1

Yes, -


*Spliced ESTs span L1. Truncated 96 amino acids from carboxyl terminus.

Active (>1% L1RP) in cell culture assay [19].

Rangwala et al. Genome Biology 2009 10:R100   doi:10.1186/gb-2009-10-9-r100

Open Data