Table 3

Full-length L1Hs subfamily elements identified through 5' expression tag analysis

Chromosome band

Genome coordinates (hg18)

ORF1, ORF2

dbRIP ID [16]

Position of 5' tag start relative L1 5; end (nt)

Tag count


1q31.3

chr1:194455124-194461155

Yes, -

-380

3

2q12.1

chr2: 102549247-102555276

Yes, Yes

-1

1

2q24.1

chr2:158131112-158137135

-, -

-77

9

2q37.1

chr2:232722151-232728183

Yes, -

-456

1

3p24.3

chr3:18946979-18953016

-. -

+42

1

3q25.32

chr3:159220160-159226187

Yes, -

0

2

4q21.21

chr4:79245914-79251943

Yes, -

-2

6

5q14.1

chr5:79110459-79116517

Yes, Yes

*

-59

1

5q14.3

chr5:85842264-85848292

Yes, Yes

-364

1

6q14.2

chr6:84100391-84106433

-, Yes

-4

4

7q35

chr7:147170579-147176648

-, -

-322

6

8q24.13

chr8:126664313-126670315

Yes, Yes

238261

-3

5

10q25.1

chr10:107127095-107133125

-, Yes

+50

8

11q14.3

chr11:90339088-90345118

-, -

+44

4

11q21

chr11:92509453-92515487

Yes, Yes

-394

2

11q22.3

chr11:108553432-108559463

Yes, Yes

+50

1

12q24.32

chr12:125349470-125355537

Yes, Yes

*

-340

5

13q12.3

chr13:29113844-29119843

Yes, Yes

L1HS235| Database39

-1

1

14q12

chr14:30223767-30229794

Yes, -

+67

1

14q22.1

chr14:51331070-51337100

Yes, -

-392

1

15q25.2

chr15:81910561-81916590

Yes, -

-7

1

16q21

chr16:64281416-64287424

Yes, -

-119

2

18p11.21

chr18:13965860-13971890

-, Yes

-2

4

20q13.2

chr20:53868030-53874021

Yes, -

237994

-474

2


*Highly active (>1% L1RP) in cell culture assay [19].

Rangwala et al. Genome Biology 2009 10:R100   doi:10.1186/gb-2009-10-9-r100

Open Data