Research
Nucleosome deposition and DNA methylation at coding region boundaries
1 Department of Biochemistry, College of Life Science and Technology, Yonsei University, 134 Sinchon-dong, Seodaemun-gu, Seoul, Korea
2 Laboratory of Dermato-Immunology, The Catholic University of Korea, 505 Banpo-dong, Seocho-gu, Seoul, Korea
Genome Biology 2009, 10:R89 doi:10.1186/gb-2009-10-9-r89
Published: 1 September 2009Additional files
Additional data file 1:
Nucleosome patterns surrounding the TSS, start codon, and stop codon in yeast and fly.
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Additional data file 2:
Illustrative genes with nucleosomal peaks at coding boundaries.
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Additional data file 3:
DNA methylation level surrounding the transcript and coding region boundaries in the mouse liver.
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Additional data file 4:
Nucleosome occupancy according to differential Pol II elongation efficiency.
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Additional data file 5:
Densities of Ser5-phosphorylated and unphosphorylated Pol II.
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Additional data file 6:
Pol II density with higher and lower nucleosome occupancy.
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Additional data file 7:
DNA bending propensity at the start and stop codons.
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Additional data file 8:
Length of the 5' UTR and gene expression level for genes with high CpG density around the start codon.
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Additional data file 9:
Overall patterns of nucleosome occupancy and DNA methylation level inside the protein coding region.
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