Table 1 |
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|
Velvet assemblies |
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|
ID |
T42 |
T38 |
T36 |
T36; QRL(Q10) = 28 |
|
|
||||
|
Total contigs |
6,945 |
8,637 |
19,118 |
39,488 |
|
N50 contig |
24,566 (N/A) |
10,706 |
2,902 |
1,299 |
|
Total DNA (bp) |
26,721,397 |
26,466,756 |
25,854,719 |
24,812,690 |
|
EST analysis* |
6,585/29 |
6,204/24 |
4,657/11 |
2,923/9 |
|
|
||||
|
*EST alignments are given as: Complete alignments/Misassemblies (see Materials and methods). Velvet assemblies were generated from Illumina GAii read data. Assembly T42 was generated from the untrimmed, no-call and shadow filtered Illumina PE reads. Assemblies T38 and T36 were generated by trimming the last 4 and 6 bp, respectively, from the T42 read set. Assembly T36, QRL(Q10) = 28 was generated with the T36 read set from which reads were removed if they failed the QRL(Q10) = 28 quality region length filtering (see Materials and methods). |
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|
DiGuistini et al. Genome Biology 2009 10:R94 doi:10.1186/gb-2009-10-9-r94 |
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