Table 1

Topological parameters of the inferred transcription network of A. thaliana

Parameter

Value


Clustering coefficient

0.319

Network diameter

13

Characteristic path length

5.065

Number of connected genes

18,169

Number of regulations inferred

128,422

Network density

7.78 × 10-4

Constitutive genes

3,952 (17.89%)

Genes regulated by one TF

3,111 (14.08%)

Genes regulated by two TFs

2,352 (10.64%)

Genes regulated by three TFs

1,966 (8.90%)

Genes regulated by four TFs

1,606 (7.27%)

Genes regulated by five TFs

1,393 (6.30%)

Genes regulated by more than five TFs

7,714 (34.91%)


Carrera et al. Genome Biology 2009 10:R96   doi:10.1186/gb-2009-10-9-r96

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