Genome Biology

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Simultaneous alignment of short reads against multiple genomes

Korbinian Schneeberger1, Jörg Hagmann1, Stephan Ossowski1, Norman Warthmann1, Sandra Gesing2, Oliver Kohlbacher2 and Detlef Weigel1*

Author Affiliations

1 Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstrasse 37-39, D-72076 Tübingen, Germany

2 Center for Bioinformatics Tübingen (ZBIT), Eberhard Karls University Tübingen, Sand 14, 72076 Tübingen, Germany

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Genome Biology 2009, 10:R98 doi:10.1186/gb-2009-10-9-r98

Published: 17 September 2009

Additional files

Additional data file 1:

Supplementary methods and discussions, as well as tables listing the features of genome graph structure and the command lines used for comparison of the different alignment programs.

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