Table 3

Summary of equivalence mapping results

Entity ontologies used


Precomposed ontology

Total classes (non-obsolete)

Classes mapped using PATO

Gross anatomy ontology

CL

CHEBI

GO

MPATH


MP (mouse)

7,048

5,156 (73%)

3421 (MA)

738

294

1,064

194

130 (EMAP)

WP (worm)

6,341

1,177 (19%)

324 (WBbt)

32

114

570

HP (human)

8,996

1,762 (20%)

1667 (FMA)

9

43

114

35

TO (plant)

958

398 (42%)

334 (PO)

2

106

2


The number of classes in each pre-composed phenotype ontology is shown, together with the size of the subset of these classes that have been mapped to EQ descriptions. The EQ descriptions can be broken down further into subsets, depending on which ontologies are used. Note the subset numbers are not mutually exclusive, as there are scenarios where an EQ descriptions references multiple ontologies, so the numbers are not additive. PO, Plant Ontology (anatomical structure); WBbt, Worm anatomy ontology.

Mungall et al. Genome Biology 2010 11:R2   doi:10.1186/gb-2010-11-1-r2

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