Table 3

Summary of BLASTX search analysis of catfish ESTs

Database

Catfish hits*

Unique protein

% of total unique proteins

Unique gene


NR

41,311

22,642

Uniprot

34,860

17,948

Refseq/Ensembl

Zebrafish

39,546

14,988

54% of 27,996

12,470

Medaka

36,641

13,588

56% of 24,461

12,920

Tetraodon

34,418

13,132

57% of 23,118

10,322

Human

33,847

12,621

33% of 38,342

9,668

Mouse

33,594

12,267

35% of 35,236

11,518

Chicken

31,646

11,059

50% of 22,194

8,717

Cumulative unique (E-10)

42,668

16,439

14,776


*Number of significant (E-10) alignments using all catfish unique sequences as queries to search the listed databases. Cumulative unique totals were derived from the sum of unique gene/protein identities across all listed species.

Wang et al. Genome Biology 2010 11:R8   doi:10.1186/gb-2010-11-1-r8

Open Data